Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J14
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    29   1.1  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   4.5  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    26   5.9  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    26   7.8  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 276  KKKHYADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSHEEI 401
            K+K Y  Q   SG   +   SIRK+C N+ +     L H  +
Sbjct: 1717 KQKEYVTQLILSGLLNKNTNSIRKTCMNILLYLRRQLGHHAL 1758


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 354 NNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHMAFTNGNT 479
           +N+SVT+   L +  +V++Y L       CR    AFTNG T
Sbjct: 853 SNISVTNENRLQYIHLVSNYYLNARLSRQCR----AFTNGFT 890


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 746 LVCLLAGARSHRTCSVLVLNRVDSKISATNSQSH 645
           LV  L      +TCSV+ ++ +DS +SA N   +
Sbjct: 459 LVRALFEVAKRQTCSVIFVDEIDSILSARNDSGN 492


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
 Frame = -1

Query: 658 IHSLMSWFTVLVPYNSS----SSHWLKNDSCRN----YPLVMTDPLLRS--KFHLRFALA 509
           ++SL+SW  +   +NS     S+ +L+ D C+N    Y ++    L  +   FHL  A  
Sbjct: 53  VNSLLSWCMLSSWFNSKLSKLSAGYLQFD-CQNDGKCYSVIAVHRLSFTLVMFHLFLAFI 111

Query: 508 LISCNSLLRVVFPLVNAM 455
           L  CN+  RV   + N +
Sbjct: 112 LSLCNTRSRVAIKIQNGL 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,400,681
Number of Sequences: 5004
Number of extensions: 68995
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)