Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J14
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0042 - 12731228-12731362,12731984-12732046,12732136-127322...    31   0.88 
04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879     30   2.7  
10_08_0364 + 17217631-17217833,17218134-17218308,17218391-172184...    28   8.2  

>07_03_0042 -
           12731228-12731362,12731984-12732046,12732136-12732207,
           12732783-12732855,12732937-12733005,12733375-12733439,
           12733677-12734087,12734186-12734230,12734338-12734413,
           12734555-12734629,12735101-12735207,12736573-12736635
          Length = 417

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +1

Query: 145 RNQKVTSFYLVFNKIMSTL*LTSEVRSGLYSHWRD 249
           ++Q  TS Y +FNK+ STL   S V SG ++  RD
Sbjct: 159 KSQAGTSGYTLFNKLRSTLSSASPVLSGAFAKLRD 193


>04_04_1215 - 31803261-31804847,31804927-31805052,31806502-31806879
          Length = 696

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 288 YADQNTSSGTPQERECSIRKSCN-NVSVTSMEDLSHEE 398
           + D   SSG+P   E S+ K C+ ++S TS  D  ++E
Sbjct: 523 HEDMQASSGSPDGSEPSVNKICDGSISWTSRNDFEYKE 560


>10_08_0364 +
           17217631-17217833,17218134-17218308,17218391-17218474,
           17218561-17218802,17218883-17219108,17219246-17219325,
           17219408-17219492,17219665-17219796,17219927-17220040,
           17220123-17220170,17220413-17220497,17220722-17220834
          Length = 528

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +3

Query: 279 KKHYADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHM 458
           +KHY +Q  +    +ER CS+ K   + +V+  E      IV  +          +RH M
Sbjct: 52  EKHYKEQMKNLQDRKERRCSLEKKLADANVSEEE---QHNIVKQFEKKETEYMRMQRHKM 108

Query: 459 A 461
           +
Sbjct: 109 S 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,092,073
Number of Sequences: 37544
Number of extensions: 408920
Number of successful extensions: 889
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)