Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J14
         (853 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24443| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.0  
SB_31409| Best HMM Match : Drf_FH1 (HMM E-Value=1.3)                   29   4.8  

>SB_24443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 27.5 bits (58), Expect(2) = 1.0
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 581 VSELPTRHDRSIIAIEVSLEICTCLNFLQ*LVTC 480
           V+  P  H   +I +     +CTC N  Q ++ C
Sbjct: 94  VNTRPNVHQNDVIVVNTRPNVCTCNNSCQQMLLC 127



 Score = 22.6 bits (46), Expect(2) = 1.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 419 QNVRCDDFFVTQIFHRGNRDVI 354
           Q + C ++FVT I H   ++V+
Sbjct: 123 QMLLCSEWFVTPILHNSLQNVV 144


>SB_31409| Best HMM Match : Drf_FH1 (HMM E-Value=1.3)
          Length = 391

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 631 VLVPYNSSSSHWLKNDSCRNYPLVMTDPLLRSKFH 527
           +L+P N +S    + D CR + L   DP   S++H
Sbjct: 198 ILLPKNRTSLERRRGDICRRHELERCDPRRSSRYH 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,672,813
Number of Sequences: 59808
Number of extensions: 524473
Number of successful extensions: 1114
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)