Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J14
         (853 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49072-5|CAA88885.2| 1109|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z49067-4|CAA88853.2| 1109|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative guan...    28   7.3  
AC024817-8|AAU05551.1|  535|Caenorhabditis elegans Hypothetical ...    28   7.3  
AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p...    28   9.7  
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr...    28   9.7  
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.     28   9.7  
M37232-1|AAA28119.1|  251|Caenorhabditis elegans myosin I protein.     28   9.7  

>Z49072-5|CAA88885.2| 1109|Caenorhabditis elegans Hypothetical
           protein C44F1.5 protein.
          Length = 1109

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 815 VYFTGHDEFRXVNFXSPXELACFLVCLLAGARSH-RTCSVLV 693
           +Y T  DEF    F +  +L+CFL+ L++    H R C  L+
Sbjct: 489 IYVTRPDEFGPREFMTELDLSCFLISLVSMVFLHSRRCERLL 530


>Z49067-4|CAA88853.2| 1109|Caenorhabditis elegans Hypothetical
           protein C44F1.5 protein.
          Length = 1109

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 815 VYFTGHDEFRXVNFXSPXELACFLVCLLAGARSH-RTCSVLV 693
           +Y T  DEF    F +  +L+CFL+ L++    H R C  L+
Sbjct: 489 IYVTRPDEFGPREFMTELDLSCFLISLVSMVFLHSRRCERLL 530


>AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative
           guanylate-binding protein protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 479 CISVSKRHVMTSTVKLGNMSQNVRCDDFFVTQIF 378
           C ++     M S+V++ N+SQN++ DD    Q+F
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLF 204


>AC024817-8|AAU05551.1|  535|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2b protein.
          Length = 535

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 479 CISVSKRHVMTSTVKLGNMSQNVRCDDFFVTQIF 378
           C ++     M S+V++ N+SQN++ DD    Q+F
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLF 204


>AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2a protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 479 CISVSKRHVMTSTVKLGNMSQNVRCDDFFVTQIF 378
           C ++     M S+V++ N+SQN++ DD    Q+F
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLF 204


>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 121 VTIHFNTCPTLTSTYNRH*ITQRNKNIVSAPGKR 20
           + IHFN   TL S    H + ++++ I  APG+R
Sbjct: 246 IRIHFNKHGTLASCDIEHYLLEKSRVIRQAPGER 279


>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 121 VTIHFNTCPTLTSTYNRH*ITQRNKNIVSAPGKR 20
           + IHFN   TL S    H + ++++ I  APG+R
Sbjct: 246 IRIHFNKHGTLASCDIEHYLLEKSRVIRQAPGER 279


>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
          Length = 1938

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 121 VTIHFNTCPTLTSTYNRH*ITQRNKNIVSAPGKR 20
           + IHFN   TL S    H + ++++ I  APG+R
Sbjct: 246 IRIHFNKHGTLASCDIEHYLLEKSRVIRQAPGER 279


>M37232-1|AAA28119.1|  251|Caenorhabditis elegans myosin I protein.
          Length = 251

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 121 VTIHFNTCPTLTSTYNRH*ITQRNKNIVSAPGKR 20
           + IHFN   TL S    H + ++++ I  APG+R
Sbjct: 132 IRIHFNKHGTLASCDIEHYLLEKSRVIRQAPGER 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,934,978
Number of Sequences: 27780
Number of extensions: 393469
Number of successful extensions: 934
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)