Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J14
         (853 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel...    29   3.9  
At1g12630.1 68414.m01467 AP2 domain-containing protein similar t...    29   5.2  
At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein ...    28   6.9  
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ...    28   9.1  

>At4g02660.1 68417.m00361 WD-40 repeat family protein /
           beige-related contains Pfam PF00400: WD domain, G-beta
           repeat; similar to BEIGE (GI:3928547) [Rattus
           norvegicus]; lysosomal trafficking regulator - Bos
           taurus, EMBL: AF114785
          Length = 3471

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +3

Query: 282 KHYADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHMA 461
           K Y ++  SS + QE+E ++  S N       +  + +++VT  V  H+  F   R  +A
Sbjct: 73  KRYWEEFRSSSSEQEKEAALNLSVNTFCRLVKQHANVDQLVTMLVEPHIFSFVIGRAFVA 132


>At1g12630.1 68414.m01467 AP2 domain-containing protein similar to
           DREB1B GI:3738226 from [Arabidopsis thaliana]; contains
           Pfam profile PF00847: AP2 domain
          Length = 188

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +3

Query: 216 SEIRTLLSLA*RV*TCSKYSKKKHYADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSHE 395
           ++IR   + A  +  C +  ++K   ++ +SS   + REC +     + S    E +  E
Sbjct: 85  ADIRAAAAAAAAMKGCEEGEEEKKAKEKKSSSSKSRARECHVDNDVGSSSWCGTEFMDEE 144

Query: 396 EIVT-SYVLAHVAQ 434
           E++    +LA++A+
Sbjct: 145 EVLNMPNLLANMAE 158


>At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 455

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 300 NTSSGTPQERECSIRKSCNNVSVTSM 377
           +T S TP+E E S R S NN+  T+M
Sbjct: 336 STKSTTPEEEERSSRSSYNNLITTTM 361


>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1218

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 258 TCSKYSKKKHYADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSHEE 398
           +C K SKKK  + +       Q R+  + ++CN  S  + E+LS+ E
Sbjct: 169 SCKKKSKKKISSSRLDCLSKYQPRDDIVARNCNAGSDDTEEELSNSE 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,418,526
Number of Sequences: 28952
Number of extensions: 350531
Number of successful extensions: 754
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)