Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J13
         (840 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442...    31   1.1  
12_02_0667 + 21682386-21682944,21683042-21683201,21683419-216834...    30   2.0  
04_04_1385 - 33157557-33157655,33157752-33158201,33158864-331590...    30   2.0  
04_04_1128 + 31103582-31103709,31105231-31105344,31105906-311064...    29   3.5  
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037...    29   4.6  
03_05_0431 + 24221881-24224586                                         29   6.1  
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626...    28   8.1  

>10_08_0106 +
           14842748-14843085,14843122-14843250,14844145-14844211,
           14847177-14847324,14847998-14848097,14848306-14848384,
           14848527-14848687,14848829-14848908,14849319-14849475,
           14849575-14849723,14849909-14850076,14850426-14850719,
           14851002-14851046,14851213-14851462,14851707-14851835,
           14852799-14853039,14853977-14854642
          Length = 1066

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 261 SSATPDRSSHPGTVVPEVANRHQPHEKRSGALQKGSPSEHHFEHPTP 401
           SS   DRS+ P    P+  +R  PH + SG+ +K S S+ + + P P
Sbjct: 849 SSQPADRSAPPPPASPDRHSRRSPH-RSSGSGKKRSSSDRYDDLPLP 894


>12_02_0667 +
           21682386-21682944,21683042-21683201,21683419-21683467,
           21683570-21683683,21683794-21684294,21684594-21684980,
           21685074-21685172,21685380-21685478,21685817-21685890,
           21686387-21687023
          Length = 892

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -1

Query: 450 AKESDGTNGGGVCAPTTEW---DARSDVRRATPFEE 352
           ++E  G  GGG   P  ++   D+RS  RR+T F+E
Sbjct: 3   SREESGNGGGGGATPAADYRSSDSRSSSRRSTRFKE 38


>04_04_1385 -
           33157557-33157655,33157752-33158201,33158864-33159004,
           33159058-33159329,33160371-33160821
          Length = 470

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -3

Query: 691 GAGCVSEHYACIRHDRGVCKFCRELPYCGGTVCFDYKALDRVVLE*TRRGRVPFLYGDGM 512
           GA C  +HY+C  H+  +C   +             KAL R +     +  + FL+G+G 
Sbjct: 411 GATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTL----AKPNLSFLFGNGK 466

Query: 511 SS 506
            S
Sbjct: 467 KS 468


>04_04_1128 +
           31103582-31103709,31105231-31105344,31105906-31106446,
           31106911-31107003,31107041-31107194,31107296-31107498
          Length = 410

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -3

Query: 703 GFQVGAGCVSEHYACIRHDRGVCKFCRE--LPYCGGTVCFDYKALDR 569
           G +VG GC+     C     G C+ CR+    YC G V F Y ++DR
Sbjct: 101 GDEVGVGCMVN--TC-----GGCESCRDGCENYCSGGVVFTYNSVDR 140


>04_04_0233 +
           23801944-23802598,23802914-23803047,23803548-23803730,
           23804145-23804318
          Length = 381

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = +1

Query: 235 YSCRKMSLLHRRLQIA----VATLGQWFRKWRIDINPTKSAAVLFKRGR 369
           +S     L+HR L  A    VA   +  R WR  + P + AA L  RGR
Sbjct: 89  FSALPPELVHRALAAAGASDVAAASRACRAWRDALRPLREAAALHARGR 137


>03_05_0431 + 24221881-24224586
          Length = 901

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 548 ARSRTVFIWG-RNVIPLSRVTPRYLTFETHGMG 453
           AR+RTVF WG  +V  +  + PR + F++ G G
Sbjct: 175 ARNRTVFCWGDESVSGVIGLAPRNVRFQSIGAG 207


>10_08_0683 -
           19860777-19861070,19861677-19861874,19862498-19862659,
           19862763-19862911,19863089-19863236,19863317-19863385,
           19863471-19863719,19863937-19864131,19864444-19864560,
           19864978-19866537
          Length = 1046

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +3

Query: 270 TPDRSSHPGTVVPEVANRHQPHEKRSGALQKGSPSEHHFEHPTP 401
           +P RS H     P    + QP+   S  LQ   P   H  +P P
Sbjct: 45  SPSRSFHGYPSAPPPQPQPQPYAHHSAPLQPYPPPPQHHAYPPP 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,323,896
Number of Sequences: 37544
Number of extensions: 568716
Number of successful extensions: 1437
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1435
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)