Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J13
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    42   4e-04
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    40   0.003
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    30   2.4  
Z70310-10|CAA94371.2|  341|Caenorhabditis elegans Hypothetical p...    29   5.4  
AL023841-13|CAA19513.2|  341|Caenorhabditis elegans Hypothetical...    29   5.4  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 2/167 (1%)
 Frame = +1

Query: 151 LLFSLYINDIPR--PPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRID 324
           LLF +Y+NDI    P +     FADDT +Y S  K       LQ A+  +  W +  ++ 
Sbjct: 86  LLFGIYVNDISSILPEKVACKQFADDTKLYASTPKTE-SENNLQSALDAVVDWTKGSKLT 144

Query: 325 INPTKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDR 504
           +N +K              T  + +  RR +        L G PI   +  + LG  +  
Sbjct: 145 LNQSK--------------TVHVTVGKRRIDFK----YHLDGYPIERKAITRDLGFLISE 186

Query: 505 GMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRP 645
            + F  H +   + A F L  ++    + +K   +  + LYKT IRP
Sbjct: 187 KLDFSDHWRKCINLAKFQLANMFNKYSTSNK---KLMILLYKTFIRP 230


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 29/125 (23%), Positives = 56/125 (44%)
 Frame = +1

Query: 154 LFSLYINDIPRPPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINP 333
           LF+ Y+ D+P   +T L  +ADD +I    +K+     ++Q+ +  + ++ ++  + I+ 
Sbjct: 543 LFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISA 602

Query: 334 TKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMT 513
            KS   +F         S  P   +         I     PIP ++  K LG+TL+    
Sbjct: 603 EKSTVTVF---------SCDPKEHK-----TKPDIYWMDDPIPVINAPKLLGITLNTMTG 648

Query: 514 FRPHI 528
            + H+
Sbjct: 649 TKDHV 653


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = +1

Query: 454 PIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKT 633
           PI   +  + LG+  D  +TF+PHIK +    +  L R   +L S   L       L+KT
Sbjct: 188 PISPSNIARDLGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKT 244

Query: 634 CIRP 645
            I P
Sbjct: 245 YILP 248


>Z70310-10|CAA94371.2|  341|Caenorhabditis elegans Hypothetical
           protein Y43C5B.3 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 568 LYPMLCSRSKLSLRNKVTLYKTCIRPGHDVCKR 666
           LYP+   RS+L L+ + T+Y++      D+ KR
Sbjct: 58  LYPLAVLRSQLQLQKQNTVYRSTFHAYSDISKR 90


>AL023841-13|CAA19513.2|  341|Caenorhabditis elegans Hypothetical
           protein Y43C5B.3 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 568 LYPMLCSRSKLSLRNKVTLYKTCIRPGHDVCKR 666
           LYP+   RS+L L+ + T+Y++      D+ KR
Sbjct: 58  LYPLAVLRSQLQLQKQNTVYRSTFHAYSDISKR 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,265,964
Number of Sequences: 27780
Number of extensions: 427980
Number of successful extensions: 1019
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)