Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J13
         (840 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31990.1 68414.m03934 expressed protein                             31   1.3  
At5g37620.1 68418.m04531 DC1 domain-containing protein contains ...    30   1.7  
At5g06860.1 68418.m00776 polygalacturonase inhibiting protein 1 ...    29   5.1  
At5g06870.1 68418.m00777 polygalacturonase inhibiting protein 2 ...    28   6.7  

>At1g31990.1 68414.m03934 expressed protein
          Length = 325

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 471 EGQISRRHPRQRDDIPSPYKNGTRPRRVYSRTTLSNAL 584
           +  + + HP + D +P  Y+N  +  R+ + TTLS+ +
Sbjct: 48  QSHVGKAHPLKMDQMPRRYRNRRKTLRLATNTTLSSII 85


>At5g37620.1 68418.m04531 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -3

Query: 658 IRHDRGVCKFCREL--PYCGGTVC 593
           IRH +G+CK CR++   + GG +C
Sbjct: 310 IRHGKGICKVCRKMVDGFYGGYIC 333


>At5g06860.1 68418.m00776 polygalacturonase inhibiting protein 1
           (PGIP1) identical to polygalacturonase inhibiting
           protein 1 (PGIP1) [Arabidopsis thaliana]
           gi|7800199|gb|AAF69827; contains leucine rich-repeat
           (LRR) domains Pfam:PF00560, INTERPRO:IPR001611
          Length = 330

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 3   LATWECQTDSCSSYETSCRTVRFDIE*RELVLVPXQLTAGVP 128
           LA+W+ QTD CS Y   C     +     L +   Q++  +P
Sbjct: 46  LASWDPQTDCCSWYCLECGDATVNHRVTALTIFSGQISGQIP 87


>At5g06870.1 68418.m00777 polygalacturonase inhibiting protein 2
           (PGIP2) identical to polygalacturonase inhibiting
           protein 2 (PGIP2) [Arabidopsis thaliana]
           gi|7800201|gb|AAF69828; contains leucine rich-repeat
           (LRR) domains Pfam:PF00560, INTERPRO:IPR001611
          Length = 330

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/64 (21%), Positives = 29/64 (45%)
 Frame = +3

Query: 3   LATWECQTDSCSSYETSCRTVRFDIE*RELVLVPXQLTAGVPQGSALSPXII*FVYQ*YT 182
           LA+W+ +TD CS Y   C     +     L++   +++  +P      P +   +++  T
Sbjct: 46  LASWDPKTDCCSWYCLECGDATVNHRVTSLIIQDGEISGQIPPEVGDLPYLTSLIFRKLT 105

Query: 183 PASG 194
             +G
Sbjct: 106 NLTG 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,405,005
Number of Sequences: 28952
Number of extensions: 401730
Number of successful extensions: 1004
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)