Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_J12
(890 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 204 3e-51
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 194 2e-48
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 181 2e-44
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 168 1e-40
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 155 1e-36
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 129 8e-29
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 90 6e-17
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 89 1e-16
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 89 2e-16
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 86 1e-15
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 80 9e-14
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 75 2e-12
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 75 3e-12
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 73 7e-12
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 73 7e-12
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 70 9e-11
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 66 9e-10
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 65 2e-09
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 63 8e-09
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 63 1e-08
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 62 2e-08
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 60 7e-08
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 59 2e-07
UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN full-le... 40 0.085
UniRef50_Q84VV2 Cluster: At4g03120; n=7; Viridiplantae|Rep: At4g... 38 0.45
UniRef50_Q9FLQ7 Cluster: Gb|AAD23008.1; n=1; Arabidopsis thalian... 36 1.0
UniRef50_Q69NC6 Cluster: Putative uncharacterized protein OJ1742... 36 1.8
UniRef50_Q8IU42 Cluster: Formin homology protein A; n=2; Dictyos... 35 3.2
UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1; ... 34 4.2
UniRef50_Q54H12 Cluster: Actin-binding protein; n=2; Dictyosteli... 34 4.2
UniRef50_UPI0000E4896A Cluster: PREDICTED: similar to CG33556-PA... 33 7.4
UniRef50_A7SLQ1 Cluster: Predicted protein; n=2; Nematostella ve... 33 7.4
UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsi... 33 9.8
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 204 bits (497), Expect = 3e-51
Identities = 87/114 (76%), Positives = 102/114 (89%)
Frame = +3
Query: 51 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 230
F P HGS+GF P+KRS RHRGKVK+FPKDDPSKPVHLTAF+GYKAGMTH+VRE DRPGS
Sbjct: 6 FSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGS 65
Query: 231 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRXFY 392
K+NKKE+VEAVTI+ETPPMV VG+VGY+ETP GLR TV+AEH+S++C+R FY
Sbjct: 66 KVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFY 119
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 194 bits (474), Expect = 2e-48
Identities = 82/114 (71%), Positives = 98/114 (85%)
Frame = +3
Query: 51 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 230
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 231 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRXFY 392
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RR FY
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFY 119
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 181 bits (441), Expect = 2e-44
Identities = 78/114 (68%), Positives = 95/114 (83%)
Frame = +3
Query: 51 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 230
F P HG +GF P KRS RHRGKVK +P+DDPS+PVHLTAF+GYKAGMTH +RE RPG
Sbjct: 6 FSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGL 65
Query: 231 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRXFY 392
KI+K+E VEAVTI+ETPP+V VGVVGY+ TP GLR+ T++AEH+S++CRR FY
Sbjct: 66 KISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFY 119
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 168 bits (409), Expect = 1e-40
Identities = 72/114 (63%), Positives = 92/114 (80%)
Frame = +3
Query: 51 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 230
F+HP HG +GF P+KRSR+ RG+ ++FPKDDPS+ HLT+F+ YKAGMTH+VR+ DRPGS
Sbjct: 57 FEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVRDVDRPGS 116
Query: 231 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRXFY 392
K+NKKE+VE VTI+E PPMV VG+VGY +TP G + + TVWA H S + RR FY
Sbjct: 117 KVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRFY 170
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 155 bits (376), Expect = 1e-36
Identities = 69/115 (60%), Positives = 86/115 (74%)
Frame = +3
Query: 48 NFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 227
NF P HGS+GF P+K S H GKVK FPKDD SKPVHLT F+ +KA MTH++++ DRP
Sbjct: 5 NFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKVDRPE 64
Query: 228 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRXFY 392
SK+NKKE+VE V I+ETPPMV +G+VGYIE P GL V+AEH+S ++ FY
Sbjct: 65 SKMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHISGKSKKCFY 119
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 129 bits (312), Expect = 8e-29
Identities = 58/97 (59%), Positives = 77/97 (79%)
Frame = +3
Query: 93 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTII 272
K S +H+GKV FPKD SKPV+L+AF+GY+AGMTHVVR+ DRPGSK++KKE+VE VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 273 ETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 383
ET P + VG VG ET GL+ +V+A+H+S +C+R
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECKR 97
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 90.2 bits (214), Expect = 6e-17
Identities = 45/99 (45%), Positives = 61/99 (61%)
Frame = +3
Query: 60 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 239
P GSMGF P+KR+ R G+VK++P+ D S V + F G+KAGMTHV+ PGS
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSA 65
Query: 240 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWA 356
E+ +AVT++E PPM + V GY TP+G + WA
Sbjct: 66 GAEVRKAVTVVEVPPMRVLAVRGYKMTPYGKQTAGEAWA 104
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 89.4 bits (212), Expect = 1e-16
Identities = 42/103 (40%), Positives = 65/103 (63%)
Frame = +3
Query: 60 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 239
P GSMGF P+KR+ R G++ ++P+ + S+ + + F G+KAGMTHV+ P S
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSA 65
Query: 240 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMS 368
+EI +AVT++E PPM + V GY TP+G++ +WA+ S
Sbjct: 66 GQEIRKAVTVVEVPPMKVLAVRGYHMTPYGMQTAGEIWADSSS 108
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 88.6 bits (210), Expect = 2e-16
Identities = 49/101 (48%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Frame = +3
Query: 60 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 239
P GS+GF P+KR+ R +VK +P+ D KPV L AF+GY+AGMTHV DRPG +
Sbjct: 9 PRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPGRPTS 67
Query: 240 KKEIVEAVTIIETPPMVCVGVVGYIETPH-GLRALLTVWAE 359
KEI VTI+ETPPM V Y P+ G +L WA+
Sbjct: 68 GKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQ 108
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 85.8 bits (203), Expect = 1e-15
Identities = 45/108 (41%), Positives = 58/108 (53%)
Frame = +3
Query: 60 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 239
P GSMGF P+KR+ + ++P DD V L F GYKAGMTHVV D+ +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTE 64
Query: 240 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 383
E VT++ETPPM V Y +TP+G + L VWA+ E R
Sbjct: 65 GMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDR 112
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 79.8 bits (188), Expect = 9e-14
Identities = 38/100 (38%), Positives = 55/100 (55%)
Frame = +3
Query: 60 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 239
P GS+ F P+KR+ R +++++P ++ V + F GYKAGMTH + D P S
Sbjct: 12 PRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTE 68
Query: 240 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 359
+EI VTI++ PPM + Y TP G R + WAE
Sbjct: 69 GEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAE 108
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 74.9 bits (176), Expect = 2e-12
Identities = 39/110 (35%), Positives = 57/110 (51%)
Frame = +3
Query: 60 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 239
P GS +YP+KR+R +V+ +P++ F GYK GM HV+ S
Sbjct: 7 PRRGSRAYYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFY 62
Query: 240 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRXF 389
+E A T+IE PP+ V V Y +TP+G + L VWA+ + +D R F
Sbjct: 63 GQERFYAATVIEVPPLKVVAVRVYEKTPYGKKTLCEVWAKDLPKDLERVF 112
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 74.5 bits (175), Expect = 3e-12
Identities = 44/100 (44%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Frame = +3
Query: 60 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 239
P GS G P+KR+ +V+++P D KP+ AF+GYK GMTHV+ DR
Sbjct: 9 PRRGSAGLRPRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMIDDREHVDTA 65
Query: 240 KKEIVEAVTIIETPPMVCVG--VVGYIETPHGLRALLTVW 353
+EI VT+IETPPMV +G V GY + G AL VW
Sbjct: 66 GQEIFVPVTVIETPPMVVLGARVYGY-DPNRGRYALTEVW 104
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 73.3 bits (172), Expect = 7e-12
Identities = 37/84 (44%), Positives = 52/84 (61%)
Frame = +3
Query: 60 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 239
P GS+GF P+KR++ +++++PK+ V + F GYKAGMTH++ D PG N
Sbjct: 7 PRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG-LTN 62
Query: 240 KKEIVEAVTIIETPPMVCVGVVGY 311
KEI VTIIETPP+ G+ Y
Sbjct: 63 GKEIFMPVTIIETPPLRVFGIRAY 86
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 73.3 bits (172), Expect = 7e-12
Identities = 41/114 (35%), Positives = 66/114 (57%), Gaps = 2/114 (1%)
Frame = +3
Query: 48 NFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 227
N P GS+ F P+KR++R +++++P++D V L AF YKAGM+H + D P
Sbjct: 4 NINRPRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPK 60
Query: 228 SKINKKEIVEAVTIIETPPM-VC-VGVVGYIETPHGLRALLTVWAEHMSEDCRR 383
S +E+ +TI+E PP+ VC + V G E + L L VWA+++ ++ R
Sbjct: 61 SPNAGQEVFTPITILEAPPINVCAIRVYGRNERNY-LTTLTEVWADNLDKELER 113
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 69.7 bits (163), Expect = 9e-11
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Frame = +3
Query: 60 PXHGSMGFYPKKRSRRHRGKVKAFPK--DDPSKPVHLTAFIGYKAGMTHVVREPDRPGSK 233
P GS+G+ P+ R+R + K++ + + D P + F+G+KAGM+H+V DRP S
Sbjct: 7 PRRGSLGYSPRVRARSQKPKMRNWAELGDQPK----IQGFVGFKAGMSHIVMVDDRPHSA 62
Query: 234 INKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVW 353
EI VTI+E P M G+ Y ++P+G + + W
Sbjct: 63 TEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAW 102
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 66.5 bits (155), Expect = 9e-10
Identities = 33/100 (33%), Positives = 56/100 (56%)
Frame = +3
Query: 60 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 239
P GS+ + P+ R++ +++A+PK D +P + A G+KAG +V DR
Sbjct: 9 PRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSIDDREKVPNA 67
Query: 240 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 359
K++V T++ TPP++ +G+ GY + GL A V+AE
Sbjct: 68 GKQLVSLGTVLVTPPVLILGIRGYSKDHDGLHAEFDVYAE 107
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 65.3 bits (152), Expect = 2e-09
Identities = 33/84 (39%), Positives = 45/84 (53%)
Frame = +3
Query: 60 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 239
P GS G P+KRS + +P+ + P L F+GYK GMTHV D P S N
Sbjct: 9 PRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMIDDWPNSPTN 67
Query: 240 KKEIVEAVTIIETPPMVCVGVVGY 311
KEI VT++E PP++ + + Y
Sbjct: 68 GKEIYMPVTVLEVPPIIPLALRAY 91
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 63.3 bits (147), Expect = 8e-09
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 19/120 (15%)
Frame = +3
Query: 51 FQHPXHGSMGFYPKKRSRRHRGKVKAFP------------------KDDPSKPVHLTAFI 176
+ P HGS+G P+KR+ + +++++P K KPV L ++
Sbjct: 6 YSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV-LLGYV 64
Query: 177 GYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGY-IETPHGLRALLTVW 353
YKAGM+H + DRP + + KEI VT+++ PP++ +G+ GY I HGL + VW
Sbjct: 65 AYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLSFGEVW 124
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 62.9 bits (146), Expect = 1e-08
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = +3
Query: 57 HPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 236
H GSM +YP+ R++ +++++P + S PV + F G+K GMTHV R S
Sbjct: 6 HSRRGSMAYYPRVRAKSIEPRIRSWP--EISGPVKVQGFAGFKVGMTHVEMVDYRKTSVT 63
Query: 237 NKKEIVEAVTIIETPPMVCVGVVGYIETPHG-LRALLTVWAEHMSED 374
+ I VT+IE PP+ +G+ Y E G + + W +++ ++
Sbjct: 64 AGQPIFVPVTVIEVPPLDVIGIRLYDEDEEGNMVVVYEKWTQNLDKE 110
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 62.1 bits (144), Expect = 2e-08
Identities = 32/98 (32%), Positives = 54/98 (55%)
Frame = +3
Query: 60 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 239
P GSMGF+P+KR+ R ++K +PK + KP+ AF YK GMTH + IN
Sbjct: 9 PRRGSMGFWPRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNIN 58
Query: 240 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVW 353
+ + VT++E P ++ +G Y + L+ + +++
Sbjct: 59 GERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLY 96
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 60.1 bits (139), Expect = 7e-08
Identities = 34/100 (34%), Positives = 52/100 (52%)
Frame = +3
Query: 51 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 230
F+HP GS+GF PKKRS R K + + +++ F K THV+R + S
Sbjct: 6 FEHPRIGSLGFLPKKRSNRIFPSSKTYKEIIHIYYPYISQFASLKVASTHVLRICNIVSS 65
Query: 231 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTV 350
K + I++ VT++E PP+ VG+ Y + L L T+
Sbjct: 66 KSYQNPIIDEVTLMECPPIEVVGLCAYALSSGHLVKLKTI 105
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 58.8 bits (136), Expect = 2e-07
Identities = 31/108 (28%), Positives = 56/108 (51%)
Frame = +3
Query: 51 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 230
F P GS+ + P+ R+R +++ +P+ +P L A G+KAG +V DR +
Sbjct: 6 FSQPRRGSLAYSPRGRARSMEARIRGWPERQ-GEP-RLLAHAGFKAGCIQIVSIDDREHT 63
Query: 231 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSED 374
K++V T++ TPP+ +G+ GY + +G V+AE + +
Sbjct: 64 PNAGKQLVSLGTVLVTPPLHVLGMRGYSKGHYGRHVKFDVFAEDLPRE 111
>UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3; n=1;
Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3 - Mus
musculus (Mouse)
Length = 109
Score = 39.9 bits (89), Expect = 0.085
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +3
Query: 108 HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 245
HR + K FPK+D K HL F+ +A MT+ V E +R G K +K
Sbjct: 8 HRIQAKDFPKEDLPKSAHLIVFLVSRAVMTYFVWEINRSGPKWTRK 53
>UniRef50_Q84VV2 Cluster: At4g03120; n=7; Viridiplantae|Rep:
At4g03120 - Arabidopsis thaliana (Mouse-ear cress)
Length = 207
Score = 37.5 bits (83), Expect = 0.45
Identities = 23/85 (27%), Positives = 27/85 (31%)
Frame = +3
Query: 441 PX*KIGPGIXXLGXPPXXLKKTXXXXQKXXPPPXXVXLCXXKXXXSPPPPXXXXGXXXPX 620
P + PG +G P L + Q PPP + PPPP
Sbjct: 81 PPMMLPPGSMPMGMRPPVLPRPMMPPQGYMPPPGVPQMMAPPGAPLPPPPQNGILRPPGM 140
Query: 621 XXXKKXGGXPXGXXXPPXXGGXPXP 695
GG P G P GG P P
Sbjct: 141 APIPGQGGGPPGMAPIPGQGGGPPP 165
>UniRef50_Q9FLQ7 Cluster: Gb|AAD23008.1; n=1; Arabidopsis
thaliana|Rep: Gb|AAD23008.1 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 1289
Score = 36.3 bits (80), Expect = 1.0
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = +3
Query: 531 PPPXXVXLCXXKXXXSPPPPXXXXGXXXPXXXXKKXGGXPXGXXXPPXXGGXPXP 695
PPP PPPP G P GG P PP GG P P
Sbjct: 997 PPPPPPFSHVSSIPPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPPPPMHGGAPPP 1051
Score = 35.9 bits (79), Expect = 1.4
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = +3
Query: 531 PPPXXVXLCXXKXXXSPPPPXXXXGXXXPXXXXKKXGGXPXGXXXPPXXGGXPXP 695
PPP PPPP G P GG P PP GG P P
Sbjct: 1010 PPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPPPPMHGGAPPP 1064
>UniRef50_Q69NC6 Cluster: Putative uncharacterized protein
OJ1742_G01.32; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1742_G01.32 - Oryza sativa subsp. japonica (Rice)
Length = 100
Score = 35.5 bits (78), Expect = 1.8
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 242 ERDRGGCHHHRDSSDGLCRCCWIH*DPSWTTRSVD 346
E DRG CHH+ S GLCR C + P+ T V+
Sbjct: 36 EGDRGCCHHYLTGSPGLCRRCPLRAHPAATGFEVE 70
>UniRef50_Q8IU42 Cluster: Formin homology protein A; n=2;
Dictyostelium discoideum|Rep: Formin homology protein A
- Dictyostelium discoideum (Slime mold)
Length = 1218
Score = 34.7 bits (76), Expect = 3.2
Identities = 20/71 (28%), Positives = 21/71 (29%)
Frame = +3
Query: 483 PPXXLKKTXXXXQKXXPPPXXVXLCXXKXXXSPPPPXXXXGXXXPXXXXKKXGGXPXGXX 662
PP T PPP + PPPP G P GG P
Sbjct: 651 PPPPPPMTGGGAPPPPPPPPPMTGGGGPPPPPPPPPMTGGGPPPPPPPPPMTGGGPPPPP 710
Query: 663 XPPXXGGXPXP 695
PP G P P
Sbjct: 711 PPPGGGPPPPP 721
>UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1205
Score = 34.3 bits (75), Expect = 4.2
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 93 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH--VVREPDRPGSKINKKEIVEAVT 266
K +++ K+K +++ K + AFI A ++ +R DR ++N I + T
Sbjct: 19 KANKKKAAKLKKLEQNEALKGRNPKAFISQAAYASNRLTIRNLDREAKRVNLPVIDRSGT 78
Query: 267 IIETPPMVCVGVVG 308
+ETPP V + VVG
Sbjct: 79 AVETPPYV-IAVVG 91
>UniRef50_Q54H12 Cluster: Actin-binding protein; n=2; Dictyostelium
discoideum|Rep: Actin-binding protein - Dictyostelium
discoideum AX4
Length = 1220
Score = 34.3 bits (75), Expect = 4.2
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +3
Query: 579 PPPPXXXXGXXXPXXXXKKXGGXPXGXXXPPXXGGXPXP 695
PPPP G P GG P PP GG P P
Sbjct: 585 PPPPMMGGGPPPPPPPPMMGGGGPPPPPPPPMMGGGPPP 623
>UniRef50_UPI0000E4896A Cluster: PREDICTED: similar to CG33556-PA;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to CG33556-PA - Strongylocentrotus purpuratus
Length = 1472
Score = 33.5 bits (73), Expect = 7.4
Identities = 19/55 (34%), Positives = 19/55 (34%)
Frame = +3
Query: 531 PPPXXVXLCXXKXXXSPPPPXXXXGXXXPXXXXKKXGGXPXGXXXPPXXGGXPXP 695
PPP L PPPP G P GG P PP GG P P
Sbjct: 440 PPPPPPPLPGGSCIPPPPPPPGMGGAPPPPPPPPFPGGVP---PPPPLPGGAPPP 491
>UniRef50_A7SLQ1 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 1027
Score = 33.5 bits (73), Expect = 7.4
Identities = 18/55 (32%), Positives = 19/55 (34%)
Frame = +3
Query: 531 PPPXXVXLCXXKXXXSPPPPXXXXGXXXPXXXXKKXGGXPXGXXXPPXXGGXPXP 695
PPP + PPPP G P GG P PP GG P P
Sbjct: 430 PPPPPPGMGGAPPPPPPPPPGMGGGPPPPPPPPPGPGGGPP-PPPPPPGGGPPGP 483
>UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsis
invicta virus 1|Rep: Structural polyprotein - Solenopsis
invicta virus 1
Length = 1137
Score = 33.1 bits (72), Expect = 9.8
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 287 HRRSLDDGDSLHDLFLVDF*TGTVRFSNHVGHTGLITDKSSQMNRFARVV 138
HRR + ++ D+ LVD T++ VG GLITD +S ++ A V
Sbjct: 475 HRRDVTAARAIADMILVDERDATMQVQAEVGGQGLITDIASTVSAVAGAV 524
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,434,023
Number of Sequences: 1657284
Number of extensions: 13398352
Number of successful extensions: 26260
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 23719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25706
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80342087756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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