Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J12
         (890 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    25   0.80 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   3.2  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   4.3  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = +3

Query: 177 GYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRAL-LTVW 353
           G K  +  ++ +P+    K+N  E  E   +      V +    +    HGL  L   +W
Sbjct: 135 GIKLSINIILSDPNTNKLKLNTNESYELTVLKSDSLAVRLSAANFFGARHGLETLNQLIW 194

Query: 354 AEHMSEDCR 380
            + +  + R
Sbjct: 195 FDEVVNELR 203


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 147 SKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVE 257
           S P HL    GY   +  + R PD+   KIN K  ++
Sbjct: 594 SHPFHLH---GYAFNVVGIGRSPDQNVKKINLKHALD 627


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 147 SKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVE 257
           S P HL    GY   +  + R PD+   KIN K  ++
Sbjct: 594 SHPFHLH---GYAFNVIGIGRSPDQNVKKINLKHALD 627


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,102
Number of Sequences: 336
Number of extensions: 2989
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)