Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J12
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   197   2e-51
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   197   2e-51
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   3.6  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    27   3.6  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   4.7  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  197 bits (481), Expect = 2e-51
 Identities = 86/114 (75%), Positives = 102/114 (89%)
 Frame = +3

Query: 51  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 230
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 231 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRXFY 392
           K++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +R FY
Sbjct: 66  KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFY 119


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  197 bits (480), Expect = 2e-51
 Identities = 85/114 (74%), Positives = 102/114 (89%)
 Frame = +3

Query: 51  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 230
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 231 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRXFY 392
           K++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +R FY
Sbjct: 66  KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFY 119


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +3

Query: 39  RTENFQHPXH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 158
           ++E  QHP     +M FY + +     G    FP++   KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 212 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESH-RPMXRVLKIF 45
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH +P   V  IF
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIF 400


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = +3

Query: 30  PACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDP-SKPVHLTAFIGYKAGMTHVV 206
           P C      H  + S   +P     +  G  K FP D+P S P+  +   G     T  +
Sbjct: 291 PGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVHPGEDVNFTVAL 350

Query: 207 REPDRPGSKI 236
           + P++   +I
Sbjct: 351 KVPEKSNKEI 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,465
Number of Sequences: 5004
Number of extensions: 45796
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)