Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J12
         (890 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         193   2e-49
SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               192   3e-49
SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_43109| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_1251| Best HMM Match : Gemini_C4 (HMM E-Value=6.4)                  29   5.1  

>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  193 bits (470), Expect = 2e-49
 Identities = 83/121 (68%), Positives = 101/121 (83%)
 Frame = +3

Query: 30  PACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVR 209
           P      F+ P HGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++R
Sbjct: 46  PKMSHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILR 105

Query: 210 EPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRXF 389
           E ++PGSK+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+R F
Sbjct: 106 EVEKPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRF 165

Query: 390 Y 392
           Y
Sbjct: 166 Y 166


>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  192 bits (468), Expect = 3e-49
 Identities = 82/114 (71%), Positives = 100/114 (87%)
 Frame = +3

Query: 51  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 230
           F+ P HGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE ++PGS
Sbjct: 5   FEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVEKPGS 64

Query: 231 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRXFY 392
           K+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+R FY
Sbjct: 65  KLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRFY 118


>SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +3

Query: 30  PACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 158
           P C T+  QHP   S+ F  KK +  ++G  K++ K  P+KPV
Sbjct: 191 PVCDTDGQQHPNLCSLHFQGKKLA--YKGFCKSYCK-SPTKPV 230


>SB_43109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 80  SHRPMXRVLKIFCATCWKTSRKLKC 6
           S + + R L+  CA CW TS+K +C
Sbjct: 184 SVKGVNRWLRHICAACWTTSKKQEC 208


>SB_1251| Best HMM Match : Gemini_C4 (HMM E-Value=6.4)
          Length = 204

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 80  SHRPMXRVLKIFCATCWKTSRKLKC 6
           S + + R L+  CA CW TS+K +C
Sbjct: 178 SVKGVNRWLRHICAACWTTSKKQEC 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,759,239
Number of Sequences: 59808
Number of extensions: 416194
Number of successful extensions: 794
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)