Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_J12
(890 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 194 5e-50
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 194 5e-50
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 194 5e-50
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 194 5e-50
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 194 5e-50
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 194 5e-50
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 46 3e-05
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 46 3e-05
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.5
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.6
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.6
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.6
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 194 bits (474), Expect = 5e-50
Identities = 82/114 (71%), Positives = 98/114 (85%)
Frame = +3
Query: 51 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 230
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 231 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRXFY 392
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RR FY
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFY 119
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 194 bits (474), Expect = 5e-50
Identities = 82/114 (71%), Positives = 98/114 (85%)
Frame = +3
Query: 51 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 230
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 231 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRXFY 392
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RR FY
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFY 119
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 194 bits (474), Expect = 5e-50
Identities = 82/114 (71%), Positives = 98/114 (85%)
Frame = +3
Query: 51 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 230
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 231 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRXFY 392
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RR FY
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFY 119
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 194 bits (474), Expect = 5e-50
Identities = 82/114 (71%), Positives = 98/114 (85%)
Frame = +3
Query: 51 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 230
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 231 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRXFY 392
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RR FY
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFY 119
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 194 bits (474), Expect = 5e-50
Identities = 82/114 (71%), Positives = 98/114 (85%)
Frame = +3
Query: 51 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 230
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 231 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRXFY 392
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RR FY
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFY 119
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 194 bits (474), Expect = 5e-50
Identities = 82/114 (71%), Positives = 98/114 (85%)
Frame = +3
Query: 51 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 230
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 231 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRXFY 392
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RR FY
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFY 119
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 46.4 bits (105), Expect = 3e-05
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = +3
Query: 51 FQHPXHGSMGFYPKKRSRRHRGKVKAFPK 137
F P HG MGF PKKRSR +RG++KAF K
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 46.4 bits (105), Expect = 3e-05
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = +3
Query: 51 FQHPXHGSMGFYPKKRSRRHRGKVKAFPK 137
F P HG MGF PKKRSR +RG++KAF K
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 1.5
Identities = 26/90 (28%), Positives = 29/90 (32%), Gaps = 2/90 (2%)
Frame = +3
Query: 432 PLXPX*KIGPGIXXLGXPPXXLKKTXXXXQKXX--PPPXXVXLCXXKXXXSPPPPXXXXG 605
P P K P + G PP + PPP SPPPP G
Sbjct: 238 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA--G 295
Query: 606 XXXPXXXXKKXGGXPXGXXXPPXXGGXPXP 695
P + G P G PP GG P P
Sbjct: 296 SPPPPPPPR--GSPPTGSLPPPQAGGSPPP 323
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 1.5
Identities = 26/90 (28%), Positives = 29/90 (32%), Gaps = 2/90 (2%)
Frame = +3
Query: 432 PLXPX*KIGPGIXXLGXPPXXLKKTXXXXQKXX--PPPXXVXLCXXKXXXSPPPPXXXXG 605
P P K P + G PP + PPP SPPPP G
Sbjct: 259 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA--G 316
Query: 606 XXXPXXXXKKXGGXPXGXXXPPXXGGXPXP 695
P + G P G PP GG P P
Sbjct: 317 SPPPPPPPR--GSPPTGSLPPPQAGGSPPP 344
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.5
Identities = 26/90 (28%), Positives = 29/90 (32%), Gaps = 2/90 (2%)
Frame = +3
Query: 432 PLXPX*KIGPGIXXLGXPPXXLKKTXXXXQKXX--PPPXXVXLCXXKXXXSPPPPXXXXG 605
P P K P + G PP + PPP SPPPP G
Sbjct: 244 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA--G 301
Query: 606 XXXPXXXXKKXGGXPXGXXXPPXXGGXPXP 695
P + G P G PP GG P P
Sbjct: 302 SPPPPPPPR--GSPPTGSLPPPQAGGSPPP 329
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/75 (26%), Positives = 22/75 (29%), Gaps = 1/75 (1%)
Frame = +3
Query: 459 PGIXXL-GXPPXXLKKTXXXXQKXXPPPXXVXLCXXKXXXSPPPPXXXXGXXXPXXXXKK 635
PG+ + G PP PPP PPPP G P
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Query: 636 XGGXPXGXXXPPXXG 680
GG G PP G
Sbjct: 777 PGGFKGGPPPPPPPG 791
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/75 (26%), Positives = 22/75 (29%), Gaps = 1/75 (1%)
Frame = +3
Query: 459 PGIXXL-GXPPXXLKKTXXXXQKXXPPPXXVXLCXXKXXXSPPPPXXXXGXXXPXXXXKK 635
PG+ + G PP PPP PPPP G P
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Query: 636 XGGXPXGXXXPPXXG 680
GG G PP G
Sbjct: 777 PGGFKGGPPPPPPPG 791
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/75 (26%), Positives = 22/75 (29%), Gaps = 1/75 (1%)
Frame = +3
Query: 459 PGIXXL-GXPPXXLKKTXXXXQKXXPPPXXVXLCXXKXXXSPPPPXXXXGXXXPXXXXKK 635
PG+ + G PP PPP PPPP G P
Sbjct: 300 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 359
Query: 636 XGGXPXGXXXPPXXG 680
GG G PP G
Sbjct: 360 PGGFKGGPPPPPPPG 374
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,376,174
Number of Sequences: 27780
Number of extensions: 338981
Number of successful extensions: 722
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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