Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J12
         (890 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   194   7e-50
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   185   4e-47
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   185   4e-47
At4g03120.1 68417.m00425 proline-rich family protein similar to ...    38   0.012
At1g29195.1 68414.m03572 expressed protein                             30   1.8  
At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein simil...    30   2.4  
At1g49470.1 68414.m05544 expressed protein contains Pfam profile...    28   9.6  

>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  194 bits (473), Expect = 7e-50
 Identities = 82/114 (71%), Positives = 101/114 (88%)
 Frame = +3

Query: 51  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 230
           F+HP HGS+GF P+KR+ RHRGKVKAFPKDDP+KP  LT+F+GYKAGMTH+VR+ ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPGS 65

Query: 231 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRXFY 392
           K++KKE  EAVTIIETPPMV VGVVGY++TP GLR+L TVWA+H+SE+ RR FY
Sbjct: 66  KLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFY 119


>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  185 bits (450), Expect = 4e-47
 Identities = 80/114 (70%), Positives = 97/114 (85%)
 Frame = +3

Query: 51  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 230
           F+HP HGS+GF P+KR+ RHRGKVKAFPKDD +KP   TAF+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGS 65

Query: 231 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRXFY 392
           K++KKE  EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RR FY
Sbjct: 66  KLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFY 119


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  185 bits (450), Expect = 4e-47
 Identities = 80/114 (70%), Positives = 97/114 (85%)
 Frame = +3

Query: 51  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 230
           F+HP HGS+GF P+KR+ RHRGKVKAFPKDD +KP   TAF+GYKAGMTH+VRE ++PGS
Sbjct: 6   FEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGS 65

Query: 231 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRXFY 392
           K++KKE  EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RR FY
Sbjct: 66  KLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFY 119


>At4g03120.1 68417.m00425 proline-rich family protein similar to U1
           small nuclear ribonucleoprotein C; contains proline rich
           extensin domains, INTERPRO:IPR002965
          Length = 207

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 23/85 (27%), Positives = 27/85 (31%)
 Frame = +3

Query: 441 PX*KIGPGIXXLGXPPXXLKKTXXXXQKXXPPPXXVXLCXXKXXXSPPPPXXXXGXXXPX 620
           P   + PG   +G  P  L +     Q   PPP    +        PPPP          
Sbjct: 81  PPMMLPPGSMPMGMRPPVLPRPMMPPQGYMPPPGVPQMMAPPGAPLPPPPQNGILRPPGM 140

Query: 621 XXXKKXGGXPXGXXXPPXXGGXPXP 695
                 GG P G    P  GG P P
Sbjct: 141 APIPGQGGGPPGMAPIPGQGGGPPP 165


>At1g29195.1 68414.m03572 expressed protein
          Length = 193

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 162 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPP 284
           +TA    KA   HV+++P  P S  ++++++ A  I+  PP
Sbjct: 37  ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77


>At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein similar
           to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase
           [Sphingopyxis macrogoltabida] GI:23330203; contains Pfam
           profile PF03328: HpcH/HpaI aldolase family
          Length = 358

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = -1

Query: 383 TSTVFRHMLRPDSQQSA*SMRGLNVSNNTDTNHRRSLDDGDSLHDLFLVDF*TGTVRFSN 204
           T T  R+   P     A ++    ++N + T+ +  L  G++L+ LFL+ F       + 
Sbjct: 50  TLTPIRYSSSPADHSPATAVEA--ITNRSKTSLKSRLRGGETLYGLFLLSFSPTLAEIAA 107

Query: 203 HVGHTGLITD 174
           H G+  ++ D
Sbjct: 108 HAGYDYVVVD 117


>At1g49470.1 68414.m05544 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 302

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 355 RSICLKTVDVXSTKNWFQXPKKK 423
           RS CLK  +  S K WF  PK K
Sbjct: 27  RSYCLKGPEAFSAKFWFPFPKLK 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,555,162
Number of Sequences: 28952
Number of extensions: 330434
Number of successful extensions: 829
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)