Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_J11
(903 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 33 0.24
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.7
03_02_0177 - 6185091-6185355,6185468-6185524,6185725-6186089,618... 31 1.7
12_01_0524 - 4167867-4168445 29 3.8
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 6.7
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892 29 6.7
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 8.8
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.8
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.8
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 8.8
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.5 bits (73), Expect = 0.24
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 342 HQPSAAAPLPYVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 178
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 395 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 547
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>03_02_0177 -
6185091-6185355,6185468-6185524,6185725-6186089,
6186180-6186332,6186422-6186655,6190532-6190978,
6191549-6191652,6192240-6192351
Length = 578
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 629 PSHPHXRDSNIXYILWSITKSISSLLCILEPNLNVQVCMSLGQL 498
P H H + N+ +S T+S++ L+C + N C++L L
Sbjct: 371 PEHRHDKLKNVKITGFSATRSLAELICHIMENTTSLECLTLDTL 414
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -1
Query: 339 QPSAAAPLPYVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 160
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 159 CEERVDHEGQ*C 124
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 240 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 356
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
Length = 291
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +1
Query: 310 VGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 489
VG CS++L R+W +++ + LRA +N S + +D+STP +
Sbjct: 132 VGRSFCSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT- 187
Query: 490 QLDN 501
LDN
Sbjct: 188 -LDN 190
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 246 VHRANTGRSSNELDRQTTELERRGVG 323
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 75 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 215
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 424 GRGERSPRRWLQPRLAVPRQASTSVPRTP 338
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 421 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 299
R RSPRR P R + + R+PA S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,223,146
Number of Sequences: 37544
Number of extensions: 505672
Number of successful extensions: 1579
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1577
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -