Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J09
         (855 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    25   0.58 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    25   0.58 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   4.1  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   4.1  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   9.4  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   9.4  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 39  RSDIESRERVPGPVTSQPESRKAPPSPRLLFSLYINDIPRSPXDP 173
           RS+ +S     G   S P+ R  PPS  L +   +ND  RSP  P
Sbjct: 55  RSNADSTSHTDG--ASTPDVR--PPSSSLSYGGPVNDDVRSPGTP 95


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 39  RSDIESRERVPGPVTSQPESRKAPPSPRLLFSLYINDIPRSPXDP 173
           RS+ +S     G   S P+ R  PPS  L +   +ND  RSP  P
Sbjct: 211 RSNADSTSHTDG--ASTPDVR--PPSSSLSYGGPVNDDVRSPGTP 251


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = +1

Query: 250  TAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTL---SIPLPTRRVNNPAPAV 408
            TAATT+G+     ++ ++P+ S            TT     + LP   V  P P +
Sbjct: 1283 TAATTIGEGQPSKKVTVSPSASVPAKIASFDDTFTTTYKEDVTLPCLAVGLPPPVI 1338


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 303 VNVDAPLPEPLSHGGSC 253
           +NVD   P P  +GG+C
Sbjct: 221 LNVDDCKPNPCQNGGTC 237


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 538 LGRLYPMICRRSKMSLRNKVTLYKTCIRPV 627
           LGR++   CR +  S  N ++  + C+  V
Sbjct: 304 LGRIFRAYCRENHASWVNHLSNIEDCLNYV 333


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/51 (21%), Positives = 22/51 (43%)
 Frame = +2

Query: 287 GASTLTPRKAQRCSSKGVALRTPR*ASLSRLGASITPPPPFAQSRCSTSPY 439
           GA+   P+  +R +++   + TPR        A+    P + ++     PY
Sbjct: 31  GAAVQVPQGGRRRAARPGVVTTPRWGCARASSATTMGGPRYGRAAAQGMPY 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,955
Number of Sequences: 336
Number of extensions: 4439
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23659332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)