Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J09
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    28   1.5  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   3.4  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    27   4.5  
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr...    27   4.5  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   4.5  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    26   5.9  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    26   7.8  

>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 277 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 393
           F+ W+    P+ S  +L ++G PP + LS  L   ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 507 DVGAECHPTVEGDA*IFDLRGPRYGLVEHRDWANG 403
           DV A C  +++     +DLR PR+ +    DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
 Frame = +2

Query: 116 SPXTIQFVYQRYTPVSXRPIWRSSPMTPPSTTRVGRRRCFIDDFRP-------QLPPWDS 274
           SP     V   Y PV   PI   +  T P T     + CF+ D          ++PP   
Sbjct: 241 SPNEKYLVSWSYEPVRLPPIGHPARETMPFTDDDEGKHCFVWDIASGRILRSFKIPPQPE 300

Query: 275 GSGSGASTLTP 307
           GS  G   + P
Sbjct: 301 GSKDGKKVIWP 311


>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +2

Query: 338 VALRTPR*ASLSRLGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRY 517
           +A R+   ++L +   ++       +S  S  PY  P  S    SP      S  ++ RY
Sbjct: 248 LAQRSGPTSALHKFATALQQQHQMQKSTSSNIPYANPAPSGFNGSPRNGDVASLASNYRY 307

Query: 518 ATVPPS 535
           A  PP+
Sbjct: 308 AKQPPT 313


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 23/115 (20%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
 Frame = +1

Query: 79  SRHSRSPARLRPLPXYYSVCISTIYPGLRETHLALFADDTAIYYSCRKKALLHRRL---Q 249
           + HSR+ ++         +  +  +P  ++   +LF+D++ +  S    +L         
Sbjct: 301 NNHSRNSSKDASFMMKSFIPSNRSHPQTQQNESSLFSDNSMVNSSSNSFSLFPNATLPNP 360

Query: 250 TAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNNPAPAVRP 414
            ++  +   F++ +       ST +L K+ RP       PLP    + P+  VRP
Sbjct: 361 PSSELLTTPFQQIKPPSQVFMSTGLLSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +1

Query: 151 YPGLRETHLALFADDTAIYYSCR-KKALLHRRLQTAATTMGQW 276
           +PG RE H A   DDT   Y  R  K L+   L     +  +W
Sbjct: 294 FPGPREGHQATTIDDTVYIYGGRDNKGLILNELWAFNYSQQRW 336


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 459 FDLRGPRYGLVEHRDWANGGGGVIDAPSRERD 364
           F+L    Y L E  +W  GG   + AP+ E D
Sbjct: 160 FELDVSNYPLPEGEEWMVGGSFGVMAPNNEED 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,275,178
Number of Sequences: 5004
Number of extensions: 72340
Number of successful extensions: 231
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)