Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J09
         (855 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product...    33   0.18 
At1g70895.1 68414.m08180 CLE17, putative CLAVATA3/ESR-Related 17...    31   0.98 
At1g08170.1 68414.m00902 histone H2B family protein similar to h...    30   1.7  
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    29   3.9  
At5g24570.1 68418.m02901 expressed protein                             29   5.2  
At2g26720.1 68415.m03205 plastocyanin-like domain-containing pro...    28   6.9  
At1g59453.1 68414.m06679 transcription factor-related weak simil...    28   6.9  
At5g35910.1 68418.m04312 3'-5' exonuclease domain-containing pro...    28   9.1  
At3g24540.1 68416.m03082 protein kinase family protein contains ...    28   9.1  
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel...    28   9.1  
At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kina...    28   9.1  

>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
           [Arabidopsis thaliana] GI:871782
          Length = 748

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 37/129 (28%), Positives = 47/129 (36%), Gaps = 9/129 (6%)
 Frame = +2

Query: 44  RYRVEGTRSR-PRHVTAGV---PQGSALSPXTIQFVYQRY-----TPVSXRPIWRSSPMT 196
           R     TR R P H +A     PQ     P T    Y  Y     TP+         P T
Sbjct: 194 RSNTSDTRPRTPIHESAATGRRPQTPETRPRTPDHRYATYDNRPRTPIHESAATERRPQT 253

Query: 197 PPSTTRVGRRRCFIDDFRPQLPPWDSGSGSGASTLTPRKAQRCSSKGVALRTPR*ASLSR 376
           P +  R    R  I D RP+ P  +S + +G    TP    R + +    R+P     S 
Sbjct: 254 PETRPRTPEHRSAIPDTRPRTPIHES-AATGRRPQTPETRPRTAQR--RGRSPEFMERSP 310

Query: 377 LGASITPPP 403
              S TP P
Sbjct: 311 GPRSKTPEP 319


>At1g70895.1 68414.m08180 CLE17, putative CLAVATA3/ESR-Related 17
           (CLE17)
          Length = 99

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 377 LGASITPPPPFAQSRCSTSPYRGP 448
           L AS  PPPP    R ST+P+RGP
Sbjct: 53  LVASPPPPPPRKALRYSTAPFRGP 76


>At1g08170.1 68414.m00902 histone H2B family protein similar to
           histone H2B from Chlamydomonas reinhardtii [SP|P54347,
           SP|P54346, SP|P50565], Volvox carteri [SP|P16867,
           SP|P16868]; contains Pfam profile PF00125 Core histone
           H2A/H2B/H3/H4
          Length = 243

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 352 TTLSIPLPTRRVNNPAPAVRPITMFDQPIPWAPK 453
           TT+ IP+  R  ++P P   P+ + D+P P  P+
Sbjct: 79  TTVKIPVDDRDESSPQPPETPVEVRDEPSPQPPE 112


>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 331 KRGRPPNTTLSIPLPTRRVNNPAPAVRPITMFDQPIPWAPK 453
           K G P + T S P P +  +  +P+  P+T    P P APK
Sbjct: 206 KSGSPVSPTTSPPAPPKSTSPVSPSSAPMT--SPPAPMAPK 244


>At5g24570.1 68418.m02901 expressed protein
          Length = 70

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 362 ASLSRLGASITPPPPFAQSRCSTSPYRGPRRSNI 463
           A+L+R+ A++ PPPP +  R   +P  G   S++
Sbjct: 16  AALTRITATLLPPPPTSHRRSVRAPTSGRADSSL 49


>At2g26720.1 68415.m03205 plastocyanin-like domain-containing
           protein / mavicyanin, putative similar to mavicyanin
           SP:P80728 from [Cucurbita pepo]
          Length = 206

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 66  VPGPVTSQPESRKAPPSPRLLFSLYINDIPRSPXDPSGA 182
           VPGPV SQ  S    PSP  L    +N+ P+    P+ A
Sbjct: 137 VPGPVRSQSSSSSPSPSP--LVDPPVNNAPQYQMGPTPA 173


>At1g59453.1 68414.m06679 transcription factor-related weak
           similarity to TFIIIC Box B-binding subunit [Homo
           sapiens] GI:442362
          Length = 1729

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +2

Query: 143 QRYTPVSXRPIWRSSPMTPPSTTRVGRRRCFIDDFRPQLPPWDSGSGS 286
           QR    S     R+  +      RV    CF+ D+   LP WDS S S
Sbjct: 626 QRAIRASKSGAMRAKGVVLAKMFRVKLLHCFLWDYFSSLPGWDSASSS 673


>At5g35910.1 68418.m04312 3'-5' exonuclease domain-containing
           protein / helicase and RNase D C-terminal
           domain-containing protein / HRDC domain-containing
           protein low similarity to SP|Q01780
           Polymyositis/scleroderma autoantigen 2 {Homo sapiens};
           contains Pfam profiles PF00570: HRDC domain, PF01612:
           3'-5' exonuclease
          Length = 838

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 408 NGGGGVIDAPSRERDAQRGVRRATPF 331
           NGGG VID    ERD     +   PF
Sbjct: 133 NGGGSVIDVKMAERDKNSSGKAKVPF 158


>At3g24540.1 68416.m03082 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 509

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +2

Query: 377 LGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYATVPPS 535
           +  S++PPPP      ST P  G R     ASPS     +   +  ++  PPS
Sbjct: 65  VNVSLSPPPPPRSPSTSTPPRLGNRNPPPPASPSGQEPTTPTMTPGFSLSPPS 117


>At3g19430.1 68416.m02464 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 559

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +1

Query: 343 PPNTTLSIPLPTRRVNNPAPAVRP-ITMFDQPIPWAP 450
           PP  T S+P PT  V+ P P   P +     P+P  P
Sbjct: 137 PPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVPTDP 173


>At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to
           phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
           [Arabidopsis thaliana] GI:3702691; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF02493: MORN repeat
          Length = 772

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 420 DVRPAHTVGPEGQIFRRHPRQ*DDIPPPHQ 509
           D++P+    P+ +I+RR PR+     PPHQ
Sbjct: 407 DLKPS-AFDPKDKIWRRFPREGTKYTPPHQ 435


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,056,996
Number of Sequences: 28952
Number of extensions: 427666
Number of successful extensions: 1603
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1588
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)