Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J08
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55220.1 68416.m06133 splicing factor, putative contains CPSF...    28   6.8  
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF...    28   6.8  
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P...    28   9.0  
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P...    28   9.0  
At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family pr...    28   9.0  
At3g24540.1 68416.m03082 protein kinase family protein contains ...    28   9.0  
At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein ...    28   9.0  
At1g60490.1 68414.m06810 phosphatidylinositol 3-kinase (PI3K) id...    28   9.0  

>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 374 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 285
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 374 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 285
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
           (PRCFC) identical to 20S proteasome beta subunit PBB2
           [Arabidopsis thaliana] GI:3421104, cDNA proteasome
           subunit prcfc GI:2511575
          Length = 274

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 7   ILFXLPFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRH 174
           I +  P +  C   +AA+ E  T    M+ S L  +   +  DS++V  LTL  +H
Sbjct: 73  IHYMAPNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVVTALTLLKKH 125


>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
           (PRCFC) identical to 20S proteasome beta subunit PBB2
           [Arabidopsis thaliana] GI:3421104, cDNA proteasome
           subunit prcfc GI:2511575
          Length = 274

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 7   ILFXLPFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRH 174
           I +  P +  C   +AA+ E  T    M+ S L  +   +  DS++V  LTL  +H
Sbjct: 73  IHYMAPNIYCCGAGTAADTEAVTD---MVSSQLRLHRYQTGRDSRVVTALTLLKKH 125


>At4g02590.1 68417.m00353 basic helix-loop-helix (bHLH) family
           protein similar to A. thaliana putative protein
           F6I18.110, GenBank accession number 2980768
          Length = 310

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 195 LGLTNVSMSQMQGQVDYDFGVGGGVPIVRCEERVDHEG 82
           LGL N S S   G    D G+GGG P +  +     EG
Sbjct: 24  LGLPNFSASSAAGLSGVDGGLGGGAPPMMLQLGSGEEG 61


>At3g24540.1 68416.m03082 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 509

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 102 PRNVRSGLPPRLQNRSQPDPA 164
           PR+  +  PPRL NR+ P PA
Sbjct: 75  PRSPSTSTPPRLGNRNPPPPA 95


>At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 597

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 313 PPQAFRGHQPSAAAPLXLRSNSVVCRSNSFEDLPV 209
           PP  F      AAA +  RS++   RS SF+  PV
Sbjct: 457 PPHGFESSAAMAAAVMNARSSAFAKRSLSFKPAPV 491


>At1g60490.1 68414.m06810 phosphatidylinositol 3-kinase (PI3K)
           identical to SP|P42339 Phosphatidylinositol 3-kinase (EC
           2.7.1.137) (PI3-kinase) (PtdIns-3- kinase) (PI3K)
           {Arabidopsis thaliana}
          Length = 814

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 610 WRGGSSRGNVPXVFPGDAPRHTR 678
           W+G  + G+ P   PG  PRH R
Sbjct: 139 WQGKEADGSFPTSTPGKVPRHER 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,108,913
Number of Sequences: 28952
Number of extensions: 358680
Number of successful extensions: 1094
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)