Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J06
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   138   1e-33
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   132   6e-32
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    29   1.2  
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    26   8.2  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  138 bits (334), Expect = 1e-33
 Identities = 66/98 (67%), Positives = 74/98 (75%)
 Frame = +1

Query: 163 LTSRWRPILYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLK 342
           L  R    ++KRR+DG H+INL +TWEKLVLAAR +  IENPADV VISSRP+G RAVLK
Sbjct: 33  LEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENPADVCVISSRPYGHRAVLK 92

Query: 343 FAAHTGATPIAGRFTPGAFTNQIQAAFREPRLFDCIGP 456
           FAAHTGAT IAGRFTPG FTN I   +REPRL     P
Sbjct: 93  FAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDP 130


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  132 bits (319), Expect = 6e-32
 Identities = 60/90 (66%), Positives = 71/90 (78%)
 Frame = +1

Query: 187 LYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGAT 366
           ++KRR+DG H++NL +TWEKLVLAAR +  IENPADV V+S+R +G RAVLKFAAHTGAT
Sbjct: 40  VWKRRSDGVHILNLGKTWEKLVLAARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGAT 99

Query: 367 PIAGRFTPGAFTNQIQAAFREPRLFDCIGP 456
            IAGRFTPG FTN I   +REPRL     P
Sbjct: 100 AIAGRFTPGNFTNYITRTYREPRLIVVTDP 129



 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 80  GGLDVLALNEEDVTKMLAATTHLGAES 160
           G  ++L   +ED+ ++LAA  H+G+++
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKN 31


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +1

Query: 217 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 393
           V+++R TW +LV+  +  + + N  ++ +I++    +  V+ FA H           PG
Sbjct: 89  VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
 Frame = +1

Query: 22  RLPVALYAFSRNSNKRNDVGXXXXXXXXXXX--CHQNACCNHPSWGRIMLTSRWRPILYK 195
           ++P+ +Y F  N  K  D+                 + C   PS GR+ L   WR I+ K
Sbjct: 6   QIPI-IYDFGENYEKNKDIWRRQCIYQILTDRFALDDHCTTAPSTGRMYLGGTWRGIIQK 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,575
Number of Sequences: 5004
Number of extensions: 55863
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)