Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J06
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   129   3e-30
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   129   3e-30
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031...    28   8.6  
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119...    28   8.6  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  129 bits (312), Expect = 3e-30
 Identities = 60/92 (65%), Positives = 72/92 (78%)
 Frame = +1

Query: 187 LYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGAT 366
           +YKRR+DG ++INL +TWEKL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA 
Sbjct: 42  VYKRRSDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAH 101

Query: 367 PIAGRFTPGAFTNQIQAAFREPRLFDCIGPCT 462
            IAGR TPG FTNQ+Q +F EPRL     P T
Sbjct: 102 AIAGRHTPGTFTNQLQTSFSEPRLLILTDPRT 133



 Score = 31.9 bits (69), Expect = 0.70
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 62  ISATMSGGLDVLALNEEDVTKMLAATTHLGAESC 163
           ++A   G    L+  E+DV  MLAA  HLG ++C
Sbjct: 1   MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNC 34


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  129 bits (311), Expect = 3e-30
 Identities = 60/92 (65%), Positives = 71/92 (77%)
 Frame = +1

Query: 187 LYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGAT 366
           +YKRR DG ++INL +TWEKL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA 
Sbjct: 42  VYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAH 101

Query: 367 PIAGRFTPGAFTNQIQAAFREPRLFDCIGPCT 462
            IAGR TPG FTNQ+Q +F EPRL     P T
Sbjct: 102 AIAGRHTPGTFTNQLQTSFSEPRLLILTDPRT 133



 Score = 29.1 bits (62), Expect = 4.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 95  LALNEEDVTKMLAATTHLGAESC 163
           L+  E+D+  MLAA  HLG ++C
Sbjct: 12  LSQREQDIQMMLAADVHLGTKNC 34


>08_02_1480 +
           27401923-27402158,27402847-27402982,27403119-27403168,
           27403810-27403813,27404394-27404494,27405084-27406305
          Length = 582

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -1

Query: 204 STSFVENRSPSGS*HDSAPRWVVAASILVTSSSLRASTSN 85
           STS   + S S     S P WV   S+LV SSS  +S+S+
Sbjct: 8   STSSSSSASSSPRAPSSPPPWVQLRSLLVASSSSSSSSSS 47


>08_01_0152 -
           1190358-1190462,1190648-1190765,1191134-1192691,
           1193338-1193530
          Length = 657

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -3

Query: 346 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 191
           + SV + D+  ++  RT  RGS  L    QPE + PRY+       H   VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,083,666
Number of Sequences: 37544
Number of extensions: 453195
Number of successful extensions: 945
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)