Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J06
         (888 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               148   7e-36
SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4)                  31   1.2  
SB_5916| Best HMM Match : R3H (HMM E-Value=2.9e-10)                    30   2.9  
SB_10221| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_10219| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  148 bits (358), Expect = 7e-36
 Identities = 65/90 (72%), Positives = 80/90 (88%)
 Frame = +1

Query: 187 LYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGAT 366
           +YKR++DG ++IN+++TWEKL+LAAR +V IENPADV VIS+RP+GQRA+LK+A+HTGAT
Sbjct: 38  VYKRKSDGVNIINVKKTWEKLLLAARIIVTIENPADVCVISARPYGQRAILKYASHTGAT 97

Query: 367 PIAGRFTPGAFTNQIQAAFREPRLFDCIGP 456
           PIAGRFTPG FTNQIQAAFREPRL     P
Sbjct: 98  PIAGRFTPGTFTNQIQAAFREPRLLIVCDP 127



 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = +2

Query: 74  MSGGLDVLALNEEDVTKMLAATTHLGAESC 163
           MSGGLD+L L EEDV K LAA  HLGA +C
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNC 30



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +2

Query: 443 IVLDPAQXHQPITEASYV 496
           IV DP   HQP+TEASYV
Sbjct: 123 IVCDPRIDHQPVTEASYV 140


>SB_37694| Best HMM Match : PSI_PsaE (HMM E-Value=7.4)
          Length = 158

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/70 (28%), Positives = 39/70 (55%)
 Frame = +2

Query: 275 PSRTPLMCSSSHHGPSVSVLY*SLPRTPVLRLLRDVSHQVLLLTRSKLHSVNLVSSIVLD 454
           PSRTPL   ++ +G  +S+ Y       VLR+ R   H ++ ++R  L ++N+  +++L 
Sbjct: 49  PSRTPLSQHNNGYGLRISI-YAVRYTAMVLRINRFALHIIVTVSRITLSAINV--TVILR 105

Query: 455 PAQXHQPITE 484
            +    P++E
Sbjct: 106 TSLVSSPMSE 115


>SB_5916| Best HMM Match : R3H (HMM E-Value=2.9e-10)
          Length = 798

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +3

Query: 150 GQNHVNFQ--METYS-LQTTC*WYPCDQLASYLGKTCSGCS--CCRSHREP 287
           G+N   F+  + T+S L T C +  C Q  S LG+ C  C+   C SH  P
Sbjct: 688 GENEEGFEALLATFSKLDTRCAFESCKQNISLLGQKCVCCTRVFCLSHHIP 738


>SB_10221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 401 LTRSKLHSVNLVSSIVLDPAQXHQPITEASYVKHSW 508
           LT   +H  NL +S  L P   H P     + KH+W
Sbjct: 37  LTSGDIHDNNLTASSTLPPQASHGPQHARLHNKHAW 72


>SB_10219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 401 LTRSKLHSVNLVSSIVLDPAQXHQPITEASYVKHSW 508
           LT   +H  NL +S  L P   H P     + KH+W
Sbjct: 37  LTSGDIHDNNLTASSTLPPQASHGPQHARLHNKHAW 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,916,761
Number of Sequences: 59808
Number of extensions: 475323
Number of successful extensions: 964
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)