Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_J06
(888 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 124 6e-29
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 123 1e-28
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 123 1e-28
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 29 4.1
At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein ... 23 6.4
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 28 7.2
At5g04460.1 68418.m00443 expressed protein 28 9.5
At2g01660.2 68415.m00093 33 kDa secretory protein-related contai... 28 9.5
At2g01660.1 68415.m00092 33 kDa secretory protein-related contai... 28 9.5
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 124 bits (300), Expect = 6e-29
Identities = 57/92 (61%), Positives = 70/92 (76%)
Frame = +1
Query: 187 LYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGAT 366
++KRR DG ++ NL +TWEKL +AAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA
Sbjct: 42 VFKRRNDGIYIFNLGKTWEKLQMAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAN 101
Query: 367 PIAGRFTPGAFTNQIQAAFREPRLFDCIGPCT 462
IAGR TPG FTNQ+Q +F EPRL P T
Sbjct: 102 AIAGRHTPGTFTNQMQTSFSEPRLLILTDPRT 133
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 123 bits (297), Expect = 1e-28
Identities = 56/92 (60%), Positives = 70/92 (76%)
Frame = +1
Query: 187 LYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGAT 366
++KRR DG ++INL +TW+KL +AAR +VAIENP D+ V S+RP+GQRAVLKFA +TG
Sbjct: 43 VFKRRDDGIYIINLGKTWDKLQMAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVN 102
Query: 367 PIAGRFTPGAFTNQIQAAFREPRLFDCIGPCT 462
IAGR TPG FTNQ+Q +F EPRL P T
Sbjct: 103 AIAGRHTPGTFTNQMQTSFSEPRLLILTDPRT 134
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 123 bits (297), Expect = 1e-28
Identities = 56/92 (60%), Positives = 70/92 (76%)
Frame = +1
Query: 187 LYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGAT 366
++KRR DG ++INL +TW+KL +AAR +VAIENP D+ V S+RP+GQRAVLKFA +TG
Sbjct: 43 VFKRRDDGIYIINLGKTWDKLQMAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTGVN 102
Query: 367 PIAGRFTPGAFTNQIQAAFREPRLFDCIGPCT 462
IAGR TPG FTNQ+Q +F EPRL P T
Sbjct: 103 AIAGRHTPGTFTNQMQTSFSEPRLLILTDPRT 134
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = -2
Query: 461 VQGPIQSKRRGSRNAAWIWLVKAPGVKRPAIGVAPVCAANFSTAR*PKGRDEMTNTSAG 285
V P+ SK RGS+ +++ + ++ I A + T+ PKG D+M +T+ G
Sbjct: 4 VAAPMASKPRGSKAESFVDNKRREDIRFANINSARAVSDAVRTSLGPKGMDKMISTANG 62
>At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 356
Score = 23.4 bits (48), Expect(2) = 6.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 230 VVPG-KNLFWLLVLS*PSRTPLMCSSSHHGPSVSVLY*SLPRTP 358
VVP +NL + V S P PL S G + + SLP TP
Sbjct: 245 VVPSFRNLQFNSVKSFPRNNPLFGFGSPRGSILGPGFQSLPTTP 288
Score = 23.4 bits (48), Expect(2) = 6.4
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +2
Query: 344 LPRTPVLRLLRDVSHQVLLLTRSKLHSVNLVSSIVLDPAQ 463
L PV+ + + ++ R KLH N + + DP Q
Sbjct: 301 LEEEPVMERVVESGRELREKMREKLHKENCMDRVAQDPDQ 340
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 213 PCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACC 335
P Q Y GK + + + R V HL+ ALR CC
Sbjct: 38 PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78
>At5g04460.1 68418.m00443 expressed protein
Length = 863
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 374 RDVSHQVLLLTRSKLHSVNLVSSIVLDPAQXHQPITEASYVKHSW 508
RD HQV + ++L+ +N + PA QPI SW
Sbjct: 681 RDTDHQVFVRNDNQLNGINGSQLLPTPPAPPPQPIWHQDLHHTSW 725
>At2g01660.2 68415.m00093 33 kDa secretory protein-related contains
Pfam PF01657: Domain of unknown function, duplicated in
33 KDa secretory proteins
Length = 259
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 258 SQNKFFPGTTQVDHMGTISTSFVENRS 178
SQ K+FPG+ ++ ++ TSFV + S
Sbjct: 33 SQEKYFPGSPYESNVNSLLTSFVSSAS 59
>At2g01660.1 68415.m00092 33 kDa secretory protein-related contains
Pfam PF01657: Domain of unknown function, duplicated in
33 KDa secretory proteins
Length = 288
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 258 SQNKFFPGTTQVDHMGTISTSFVENRS 178
SQ K+FPG+ ++ ++ TSFV + S
Sbjct: 33 SQEKYFPGSPYESNVNSLLTSFVSSAS 59
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,086,946
Number of Sequences: 28952
Number of extensions: 329661
Number of successful extensions: 666
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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