Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J04
         (874 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.5  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   5.5  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   9.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 469  AESAEDGPTTTFLRELAIRYAMVIVSSILERDEKHSDIL 585
            AE    GP T+   E   ++++V+      R+E + DIL
Sbjct: 991  AEEVPGGPPTSIRVETNDQHSLVVYWKPPAREEWNGDIL 1029


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = -3

Query: 407 WKQMMLTPSWPATSMIFLTLLKIAFFCSLTGRSVGTAMEC 288
           WK    T  +    + F+ LL I+FF +       T   C
Sbjct: 124 WKSYKRTQIFITCELFFVILLWISFFLNFMLHCNNTTWRC 163


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 289 HSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGV 390
           + IAV  D   NE  +   N +KK+  +A   GV
Sbjct: 13  YPIAVLIDELKNEDVQLRLNSIKKLSTIALALGV 46


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,423
Number of Sequences: 336
Number of extensions: 3818
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24099889
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)