Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_J04
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 276 1e-74
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 68 1e-11
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 52 8e-07
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 51 1e-06
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 39 0.005
02_05_0060 + 25484349-25484496,25485514-25485705,25486614-254869... 33 0.23
12_02_0453 + 19192060-19192301,19192477-19192559,19193246-191933... 30 2.1
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728... 30 2.8
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 29 4.9
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 29 4.9
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 276 bits (677), Expect = 1e-74
Identities = 141/255 (55%), Positives = 170/255 (66%), Gaps = 8/255 (3%)
Frame = +1
Query: 73 SLESIINNNLTGRDLEEFNRIHFGRR--NNLE-IKLKESSIXXXXXXXXXXXXXXFPAKD 243
SL ++ +NL+ +E +R+ G LE I L E++ F A
Sbjct: 28 SLHRLLQSNLSPELFKEASRLLLGLNCGRALEAISLPEATSALAKAHNFDVQAFRFDADK 87
Query: 244 EQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQ----- 408
E R PR+++VG+IQ+SIA+PT +QKKAI KVK +ID AG GVNI+C Q
Sbjct: 88 EYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLS 147
Query: 409 ELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIRYAMVIVSSILERDEKHSDILW 588
E W MPFAFCTREK+ WCEFAE DG +T FL++LA +Y MVIVS ILERD H +I+W
Sbjct: 148 EAWTMPFAFCTREKR-WCEFAEPV-DGESTQFLQQLAKKYNMVIVSPILERDVNHGEIVW 205
Query: 589 NTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFAXRYGKIAVXICFGRDH 768
NTAVVI + GN+IG HRKNHIPRVGDFNES YYMEGNTGHPVF YGKI V IC+GR H
Sbjct: 206 NTAVVIGNHGNIIGIHRKNHIPRVGDFNESTYYMEGNTGHPVFETAYGKIGVNICYGRHH 265
Query: 769 VLNWMMFGXNGXEIV 813
LNW+ FG NG EIV
Sbjct: 266 PLNWLAFGLNGAEIV 280
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 67.7 bits (158), Expect = 1e-11
Identities = 39/134 (29%), Positives = 70/134 (52%)
Frame = +1
Query: 355 KKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIRYAM 534
+++I A ++G NI+ QEL+ + FC ++ + + A+ + PT ++LA +
Sbjct: 32 ERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKELEV 90
Query: 535 VIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPV 714
VI S E + ++ +N+ +I G +G +RK+HIP + E Y+ G+TG
Sbjct: 91 VIPVSFFE---EANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKA 147
Query: 715 FAXRYGKIAVXICF 756
F +Y I V IC+
Sbjct: 148 FKTKYATIGVGICW 161
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 51.6 bits (118), Expect = 8e-07
Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Frame = +1
Query: 397 ICFQELWNMPFAFCTREKQPWCEFAESAEDG--PTTTFLRELAIRYAMVIVSSILERDEK 570
+ FQE+WN P++ E P E + G P+ + L E+A R + IV + E+
Sbjct: 16 VLFQEIWNCPYSM---ETLP--SHGEDIDGGASPSVSMLSEVAARRRITIVGGSIP--ER 68
Query: 571 HSDILWNTAVVISDTGNVIGKHRKNHIPRV---GD--FNESNYYMEGNTGHPVFAXRYGK 735
S L+NT VI G + KHRK H+ + GD F ES+ + G + G+
Sbjct: 69 SSGRLFNTCCVIGPDGQIKAKHRKLHLFEIDIPGDITFRESDTFTAGQE-PTIVDTDVGR 127
Query: 736 IAVXIC 753
I + IC
Sbjct: 128 IGIGIC 133
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 50.8 bits (116), Expect = 1e-06
Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 9/155 (5%)
Frame = +1
Query: 319 VNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDG--- 489
V K + ++ I+ A G ++ E+WN P++ + E+AE E G
Sbjct: 55 VTADKARNIARAREAIEAAAAGGAKLVLLPEIWNGPYS-----NDSFPEYAEDIEAGGDA 109
Query: 490 -PTTTFLRELAIRYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNH-----I 651
P+ + + E+A + +V + E+ + L+NT V G + GKHRK H I
Sbjct: 110 APSFSMMSEVARSLQITLVGGSIS--ERSGNKLYNTCCVFGSDGELKGKHRKIHLFDIDI 167
Query: 652 PRVGDFNESNYYMEGNTGHPVFAXRYGKIAVXICF 756
P F ES G V G+I + IC+
Sbjct: 168 PGKITFKESKTLTAGQ-DLTVVDTDVGRIGIGICY 201
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 39.1 bits (87), Expect = 0.005
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 13/153 (8%)
Frame = +1
Query: 337 AIFNKVKKIIDVAGQEGVNIICFQELW------NMPFAFC-----TREKQPWCEFAESAE 483
A +K +K++ A G I+ F E++ F + K+ + ++ +A
Sbjct: 47 ATLDKAEKLVAEAAGYGSQIVLFPEVFVGGYPHGSTFGLTIGNRSAKGKEDFHKYHAAAI 106
Query: 484 D--GPTTTFLRELAIRYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPR 657
D GP T L LA +Y + +V ++ER L+NT + G +GKHRK +
Sbjct: 107 DVPGPEVTRLAALAGKYKIFLVMGVVERV---GYTLYNTVLFFDPLGKYLGKHRK--VMP 161
Query: 658 VGDFNESNYYMEGNTGHPVFAXRYGKIAVXICF 756
G + +G+T PV+ GKI IC+
Sbjct: 162 TGLERVFWGFGDGST-IPVYDTPIGKIGAVICW 193
>02_05_0060 +
25484349-25484496,25485514-25485705,25486614-25486907,
25487140-25487421,25487571-25487743
Length = 362
Score = 33.5 bits (73), Expect = 0.23
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Frame = +1
Query: 487 GPTTTFLRELAIRYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGD 666
GP T L +A +Y + +V ++ER+ L+ + + G +GKHRK +P +
Sbjct: 114 GPEVTRLAAMAGKYKVFLVMGVIERE---GYTLYCSVLFFDPLGRYLGKHRK-LMPTALE 169
Query: 667 FNESNYYMEGNTGHPVFAXRYGKIAVXICF-GRDHVLNWMMFGXNGXEI 810
+ +G+T PV+ GKI IC+ + +L ++G G EI
Sbjct: 170 -RIIWGFGDGST-IPVYDTPLGKIGALICWENKMPLLRTALYG-KGIEI 215
>12_02_0453 +
19192060-19192301,19192477-19192559,19193246-19193328,
19193616-19193668,19194041-19194169,19194585-19194643,
19195317-19195429,19195571-19195663,19195810-19195912,
19196233-19196315,19196407-19196448
Length = 360
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = +1
Query: 562 DEKHSDILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYMEGNTGHPVFAXR 726
D+ H +NT V+I D+G + +RK H +P + ES + G+T V +
Sbjct: 171 DDSHQ---YNTHVLIDDSGEIRSSYRKIHLFDVDVPGNMVYKESRFTTAGDTVVAVDSP- 226
Query: 727 YGKIAVXICF 756
+G++ + +C+
Sbjct: 227 FGRLGLTVCY 236
>10_08_0747 -
20272157-20272456,20272538-20272664,20272770-20272843,
20272928-20272971,20273697-20276223
Length = 1023
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/74 (21%), Positives = 31/74 (41%)
Frame = +1
Query: 412 LWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIRYAMVIVSSILERDEKHSDILWN 591
+WN+ + +E QP E A +D R++ + + ++ D D+ W+
Sbjct: 765 VWNLEYCLQLQESQPSTETALDLDDS-GAHLPRDIVVARRVAPLAPDASADAAGDDMSWS 823
Query: 592 TAVVISDTGNVIGK 633
+ TGNV +
Sbjct: 824 ETASFTATGNVFSQ 837
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 488 PSSADSANSHHGCFSLVQNAKGIFHNSWKQMMLTPSW 378
PS+ S N F L++N NSW Q+++T W
Sbjct: 628 PSTTASVNLDESQFKLLRNCFQGTSNSWGQVIVTAGW 664
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 461 HHGCFSLVQNAKGIFHNSWKQMMLTPSWP--ATSMIFLTLLKIAFF 330
H C ++++ + G+ N W+ + PS+P SMI L + F
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACLALHNF 694
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,256,433
Number of Sequences: 37544
Number of extensions: 474079
Number of successful extensions: 1344
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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