Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_J04
(874 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2) 48 8e-06
SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0) 48 8e-06
SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.002
SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10) 40 0.003
SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6) 31 1.2
SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_27173| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_8338| Best HMM Match : PA (HMM E-Value=5.7e-10) 29 3.8
SB_24587| Best HMM Match : ResIII (HMM E-Value=0.82) 29 5.0
SB_47836| Best HMM Match : F5_F8_type_C (HMM E-Value=0.022) 29 6.6
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022) 29 6.6
SB_33687| Best HMM Match : Filament (HMM E-Value=0.1) 28 8.7
SB_15536| Best HMM Match : MdcD (HMM E-Value=3.9) 28 8.7
>SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2)
Length = 101
Score = 48.4 bits (110), Expect = 8e-06
Identities = 26/92 (28%), Positives = 44/92 (47%)
Frame = +1
Query: 55 MENETHSLESIINNNLTGRDLEEFNRIHFGRRNNLEIKLKESSIXXXXXXXXXXXXXXFP 234
M E SL + NL DL+E RI +G + ++ L +++
Sbjct: 1 MAAEFESLNKTLEKNLPAEDLKEVKRILYGNPVS-DLSLPAAAVSVAAELDFELAGYKID 59
Query: 235 AKDEQTRPPRIVKVGIIQHSIAVPTDRPVNEQ 330
A E+ R PR+V++G +Q+ I PT+ P+ +Q
Sbjct: 60 AAAEELRQPRLVRIGAVQNKIVEPTNMPIAKQ 91
>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
Length = 242
Score = 48.4 bits (110), Expect = 8e-06
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 6/170 (3%)
Frame = +1
Query: 265 IVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCTR 444
+ ++G++Q +AV ++ N Q+ K+K+ + G I+ E +N P+
Sbjct: 5 VFRIGLVQ--LAVTANKLQNLQRAR--EKIKEAVAA----GAKIVALPECFNSPYG---- 52
Query: 445 EKQPWCEFAESAEDGPTTTFLRELAIRYAMVIVS-SILERDEKHSDILWNTAVVISDTGN 621
Q + ++AE G ++ L E+A IV SI ER L+NT++ +GN
Sbjct: 53 -TQYFKDYAEEIP-GESSNMLAEVAKETGAYIVGGSIPERASNRK--LYNTSLSYDPSGN 108
Query: 622 VIGKHRKNH-----IPRVGDFNESNYYMEGNTGHPVFAXRYGKIAVXICF 756
++GKHRK H +P F ES G + Y KI + IC+
Sbjct: 109 LMGKHRKIHLFDIDVPGKIRFQESEVLSPGE-NLTILDTEYCKIGIGICY 157
>SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 40.7 bits (91), Expect = 0.002
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Frame = +1
Query: 256 PPRIVKVGIIQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAF 435
P + ++G++Q +AV ++ N Q+ K+K+ + G I+ E +N P+
Sbjct: 4 PILVFRIGLVQ--LAVTANKLQNLQRAR--EKIKEAVAA----GAKIVALPECFNSPYG- 54
Query: 436 CTREKQPWCEFAESAEDGPTTTFLRELAIRYAMVIVS-SILERDEKHSDILWNTAVVISD 612
Q + ++AE G ++ L E+A IV SI ER L+NT++
Sbjct: 55 ----TQYFKDYAEEIP-GESSNMLAEVAKETGAYIVGGSIPERASNGK--LYNTSLSYDP 107
Query: 613 TGNVIGKHRK 642
+GN++GKHRK
Sbjct: 108 SGNLMGKHRK 117
>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
Length = 128
Score = 39.9 bits (89), Expect = 0.003
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Frame = +1
Query: 466 FAESAED--GPTTTFLRELAIRYAMVIVS-SILERDEKHSDILWNTAVVISDTGNVIGKH 636
F + AE+ G ++ L E+A IV SI ER L+NT++ +GN++GKH
Sbjct: 12 FKDYAEEIPGESSNMLAEVAKETGAYIVGGSIPERASNGK--LYNTSLSYDPSGNLMGKH 69
Query: 637 RKNH-----IPRVGDFNESNYYMEGNTGHPVFAXRYGKIAVXICF 756
RK H +P F ES G + Y KI + IC+
Sbjct: 70 RKIHLFDIDVPGKIRFQESEVLSPGE-NLTILDTEYCKIGIGICY 113
>SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6)
Length = 949
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 235 AKDEQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 372
A D + P VK H + +PT++P+ E + + +++K+ ++ +V
Sbjct: 762 AHDHRNNPSLAVKAQTYHHYLCIPTEKPIEEWRPSELWHKLDRLAEV 808
>SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 716
Score = 29.5 bits (63), Expect = 3.8
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Frame = +1
Query: 589 NTAVVISDTGNVIGK---HRKNHIPRVGDFNE----SNYYMEGN-TGHPVFAXRYGKI 738
NTA +IS+TG+VI K H K + P D + Y GN TG PV+A YG++
Sbjct: 52 NTAKIISNTGDVIYKTRTHEKVYEPSEKDPSAIPPFLAYSPSGNVTGDPVYA-NYGRV 108
>SB_27173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1206
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 235 AKDEQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 372
AKD + P VK H + +P ++P+ E + + + +K+ ++ +V
Sbjct: 823 AKDHRNNPRLAVKAQTYHHYLCIPAEKPIEEWRPSELGHKLDRLAEV 869
>SB_8338| Best HMM Match : PA (HMM E-Value=5.7e-10)
Length = 326
Score = 29.5 bits (63), Expect = 3.8
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Frame = +1
Query: 589 NTAVVISDTGNVIGK---HRKNHIPRVGDFNE----SNYYMEGN-TGHPVFAXRYGKI 738
NTA +IS+TG+VI K H K + P D + Y GN TG PV+A YG++
Sbjct: 143 NTAKIISNTGDVIYKTRTHEKVYEPSEKDPSAIPPFLAYSPSGNVTGDPVYA-NYGRV 199
>SB_24587| Best HMM Match : ResIII (HMM E-Value=0.82)
Length = 250
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 235 AKDEQTRPPRIVKVGIIQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 372
A D + P VK H + +PT++P+ E + + + +K+ ++ +V
Sbjct: 177 AHDHRNNPRLAVKAQTYHHYLCIPTEKPIEEWRPSELGHKLDRLAEV 223
>SB_47836| Best HMM Match : F5_F8_type_C (HMM E-Value=0.022)
Length = 1002
Score = 28.7 bits (61), Expect = 6.6
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = -2
Query: 429 EGHIPQLLETD--DVNTLLAGNIDDLLDFIENCFLLLVDWTIGGHRDGMLNYSYLHNSRR 256
+GH+ LLE + D L+ ++LLD LL V++ GH G+L +L
Sbjct: 312 KGHLVGLLEVEFLDKEHLVGLLEEELLDKGHLVGLLEVEFLDKGHLVGLLEVEFLDKGHL 371
Query: 255 SGLL---VLGRESVCGDVEVSLL 196
GLL L + + G +EV L
Sbjct: 372 VGLLEEEFLDKGQLVGLLEVEFL 394
>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 426 GHIPQLLETDDVNTLLAGNIDDLLDFIENCFLLLVDW 316
G +P + +NTLL GN D F NC LL W
Sbjct: 723 GLVPYWTKLFGINTLLVGNARDSHLFCRNCSGLLPYW 759
>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
Length = 1671
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 576 RMLLVPF*YRGHDHHCVPDGEFPKE 502
R L+ PF +R +DH V D FPK+
Sbjct: 74 RKLIKPFYFRQYDHGSVVDAIFPKD 98
>SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)
Length = 700
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 565 EKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYME 693
+K D LW A + D KH++N I R +F E ++Y E
Sbjct: 391 QKRFDTLWVKAKSMMDEET---KHKENAIKRSKEFEERSHYFE 430
>SB_15536| Best HMM Match : MdcD (HMM E-Value=3.9)
Length = 146
Score = 28.3 bits (60), Expect = 8.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -3
Query: 461 HHGCFSLVQNAKGIFHNSWKQMMLTPSW 378
HH CF ++ +A + Q ++PSW
Sbjct: 44 HHACFGIIPSALSVLVERGDQEAVSPSW 71
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,304,347
Number of Sequences: 59808
Number of extensions: 537072
Number of successful extensions: 1547
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1544
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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