Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J04
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    23   3.7  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    23   3.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.4  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   8.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   8.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   8.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.5  

>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 491 RPRPSFGNSPSGTQW 535
           +PRPSF  S +G +W
Sbjct: 32  QPRPSFELSKNGDEW 46


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 491 RPRPSFGNSPSGTQW 535
           +PRPSF  S +G +W
Sbjct: 34  QPRPSFELSKNGDEW 48


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 422 IFHNSWKQMMLTPSWPATSMI 360
           I  NS +    +P WP+TS I
Sbjct: 576 IIRNSQQAPGQSPDWPSTSQI 596


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 16/63 (25%), Positives = 26/63 (41%)
 Frame = -2

Query: 864 VPHXXXPLXRXXXXTDXNDFXSIXSEHHPVQDVVPSEADXHRDLAVSXREYRMAGVTFHV 685
           +P    P+ +    T  +      S   P+Q   P + + +  L VS     MAGV +  
Sbjct: 791 IPVYCVPVPQVNDSTILSPVREKLSSSQPMQ---PPQQNPYMFLPVSYMSTTMAGVIYPP 847

Query: 684 VVG 676
           V+G
Sbjct: 848 VIG 850


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 155 LFRRPK*ILLNSSKSRPVKL 96
           LFR PK I +N+++ + +KL
Sbjct: 119 LFRGPKGIQINATELQKIKL 138


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 321 DWTIGGHRDGML 286
           +W +G H DG L
Sbjct: 518 EWKVGNHEDGYL 529


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 321 DWTIGGHRDGML 286
           +W +G H DG L
Sbjct: 433 EWKVGNHEDGYL 444


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 321 DWTIGGHRDGML 286
           +W +G H DG L
Sbjct: 752 EWKVGNHEDGYL 763


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,572
Number of Sequences: 438
Number of extensions: 5064
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)