Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J03
         (858 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    23   2.3  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   5.4  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   5.4  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   9.4  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   9.4  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 310 STSVTRQRTSAPSAPGRRRRLV 375
           S S  R R+S  SAPG+R  L+
Sbjct: 234 SESSLRPRSSQKSAPGKRTPLI 255


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 294 DGVIVFDECHKAKNLCPVGSGKATKTGLTALELQNK 401
           D +  FD      N CP   G+ T T    LEL+ +
Sbjct: 140 DWMSPFDRVVCGPNGCPRRRGRQTYTRFQTLELEKE 175


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 294 DGVIVFDECHKAKNLCPVGSGKATKTGLTALELQNK 401
           D +  FD      N CP   G+ T T    LEL+ +
Sbjct: 199 DWMSPFDRVVCGPNGCPRRRGRQTYTRFQTLELEKE 234


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 562 SMAPTPLXSTALMKSIKVGKGVPSPHIPR 476
           S  P P       K ++V + VP P +P+
Sbjct: 185 SSVPQPQPVLPTYKWMQVKRNVPKPTVPK 213


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 562 SMAPTPLXSTALMKSIKVGKGVPSPHIPR 476
           S  P P       K ++V + VP P +P+
Sbjct: 185 SSVPQPQPVLPTYKWMQVKRNVPKPTVPK 213


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,126
Number of Sequences: 336
Number of extensions: 1722
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23763101
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)