Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J03
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    29   0.84 
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    26   7.9  

>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 144 YAKISSAVNGNVKKGVVFATYSSLIG 221
           Y K  S VN N+  G +F  Y++++G
Sbjct: 783 YTKAKSTVNANIVAGTLFRNYTTILG 808


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = +3

Query: 78  AERDLRDIGAGKIEVYPLNKFKYAKISSAVNGNVKKGVVFATYSS---LIGETASNNTKY 248
           A  ++  +GAG +   PL        S+++   +      A+ +    LIG   +N  + 
Sbjct: 332 AAYEMTSLGAGYLGTAPLASQSILLTSTSLLFQIPFAFAVASSTRVGHLIGSGRANLARL 391

Query: 249 RSRLKQLLQWCGEDFDGVIVF 311
            SR+   L  C   FDG ++F
Sbjct: 392 CSRVAYSLALCISIFDGSLIF 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,763,323
Number of Sequences: 5004
Number of extensions: 26726
Number of successful extensions: 88
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)