Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_J03
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0774 + 7482311-7482919,7484012-7484077,7484211-7484384,748... 200 6e-55
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 74 2e-13
04_03_0387 - 15251816-15251905,15251999-15252069,15252098-152523... 30 2.1
01_01_0624 - 4696314-4696608,4696704-4697394,4699525-4699540,469... 30 2.1
07_03_0387 - 17536026-17536636,17536772-17537150 29 3.6
02_02_0127 - 7038149-7038292,7038380-7038697,7038781-7038879,703... 29 4.7
01_01_0985 - 7788318-7789571 29 6.3
04_04_0126 + 22952577-22952871,22952912-22953519,22954125-229545... 28 8.3
>08_01_0774 +
7482311-7482919,7484012-7484077,7484211-7484384,
7484473-7484603,7484726-7484802,7484981-7485064,
7487885-7488066,7488189-7488266,7489813-7489945,
7491610-7491670,7491861-7491942,7492143-7492271,
7492510-7492653,7493102-7493204,7493382-7493513,
7494127-7494485,7495149-7495229,7495384-7495450,
7495636-7495706,7496087-7496178,7496365-7496458,
7497692-7497789,7498206-7498341,7498599-7498618,
7498781-7498876,7498973-7499060,7499171-7499288,
7499738-7499759,7500203-7500326,7500625-7500702,
7500837-7500955,7501816-7501869,7502260-7502362,
7503133-7503261,7503345-7503453,7503788-7503819
Length = 1424
Score = 200 bits (487), Expect(2) = 6e-55
Identities = 94/179 (52%), Positives = 123/179 (68%)
Frame = +3
Query: 117 EVYPLNKFKYAKISSAVNGNVKKGVVFATYSSLIGETASNNTKYRSRLKQLLQWCGEDFD 296
+++ LNK Y+KI S G + GV+F TYSSLI +++ K RSRL+QL++WCG +FD
Sbjct: 380 DLHALNKLPYSKIDSKAVG-ITTGVIFVTYSSLI----ASSEKGRSRLQQLIEWCGSEFD 434
Query: 297 GVIVFDECHKAKNLCPVGSGKATKTGLTALELQNKLPKARVVYASATGASEPRNMAYMVR 476
G++VFDECHKAKNL P + T+TG LE+Q LP+ARVVY SATGASEPRN+ YMVR
Sbjct: 435 GLLVFDECHKAKNLIPEAGSQPTRTGKAVLEIQEMLPEARVVYCSATGASEPRNLGYMVR 494
Query: 477 LGIWGEGTPFPTFMDFINAVXXRGVGAMXIXAMDXXLXXMYIXRXLSFXGXSFRXXXVP 653
LG+WG+GT F F F+ A+ GVGA+ + AMD MY+ R LS+ G +F P
Sbjct: 495 LGLWGDGTSFQNFQKFLGALEKGGVGALELVAMDMKARGMYVCRTLSYKGAAFATVEAP 553
Score = 33.1 bits (72), Expect(2) = 6e-55
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 54 VSNDLKYDAERDLRDIGAGKIE 119
+ +DLKYDA RDL D+GA +E
Sbjct: 331 IGSDLKYDARRDLDDVGAKYVE 352
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 73.7 bits (173), Expect = 2e-13
Identities = 41/97 (42%), Positives = 54/97 (55%)
Frame = +3
Query: 54 VSNDLKYDAERDLRDIGAGKIEVYPLNKFKYAKISSAVNGNVKKGVVFATYSSLIGETAS 233
+ +DLKYDA RDL D+GA ++V+PLNK Y+K+ S G +K GV+F T
Sbjct: 340 IGSDLKYDARRDLDDVGAKCVQVHPLNKLPYSKLDSKAIG-IKNGVIFVT---------- 388
Query: 234 NNTKYRSRLKQLLQWCGEDFDGVIVFDECHKAKNLCP 344
+FDG++VFDECHKAKNL P
Sbjct: 389 ----------NWFSGVDNEFDGLLVFDECHKAKNLIP 415
>04_03_0387 -
15251816-15251905,15251999-15252069,15252098-15252323,
15252344-15252496,15252570-15252656,15252745-15252948,
15253038-15253159,15253354-15253507,15254329-15254434,
15254507-15254617,15256468-15256622
Length = 492
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +3
Query: 252 SRLKQLLQWCGEDFDGVIVFDECHKAKNLCPVGSGKATKTGLTALEL 392
+R ++ L+ G + D FDECHK K+ V K GLT L L
Sbjct: 307 TRKRKELEVNGVEVDRETFFDECHKTKDGRYVTDATPEKRGLTYLFL 353
>01_01_0624 -
4696314-4696608,4696704-4697394,4699525-4699540,
4699577-4699630,4699741-4699809
Length = 374
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +3
Query: 105 AGKIEVYPLNKFKYAKISSAVNGNVKKGVVFATYSSLIGETASNNTKYRSRLKQLLQWC 281
AG + +YP+NK K+ SAV ++ VF S L A++ ++ +++L++C
Sbjct: 265 AGPLIIYPVNKSKWDAAMSAVTPEGEE-EVFYVVSLLFSAVANDVAALEAQNRRILRFC 322
>07_03_0387 - 17536026-17536636,17536772-17537150
Length = 329
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -3
Query: 553 PTPLXSTALMKSIKVGKGV-PSPHIPRRTMYAMFLGSEAPVADAYTTLALGSLFCSSR 383
P PL + + GV P P +P + P A+A+TTL G+L +R
Sbjct: 185 PLPLPPAPVFPRVSTVLGVAPPPPLPSPPPSTQHVSPTVPAAEAFTTLGGGTLGSGTR 242
>02_02_0127 -
7038149-7038292,7038380-7038697,7038781-7038879,
7038958-7039050,7039138-7039341,7039435-7039525,
7039593-7039695,7039761-7039907,7040825-7040876,
7041003-7041138,7041846-7041911,7041981-7042045
Length = 505
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 252 SRLKQLLQWCGEDFDGVIVFDECHKAKNLCPVGSGKATKTGLTALELQNK 401
+R ++ L+ G + D FDECHK KN V K ++L K
Sbjct: 313 ARKRKELEVNGVEVDRATFFDECHKTKNGRYVNDATEEKMNEVYMKLAEK 362
>01_01_0985 - 7788318-7789571
Length = 417
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -3
Query: 538 STALMKSIKVGKGVPSPHIPRRTMY 464
S A + +++G+G P+PH PRR+++
Sbjct: 34 SAAGREVVELGEGRPAPHYPRRSVF 58
>04_04_0126 +
22952577-22952871,22952912-22953519,22954125-22954596,
22954882-22954955,22955559-22955937,22956659-22956711
Length = 626
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = +2
Query: 323 QGKEPLPRRLREGDEDWSDGPRXXXXXXXXXXXVRVRHRGL--GAQEHGVHGAP 478
Q K PL RR E DE D R +R RH+ L Q HG AP
Sbjct: 505 QTKSPLTRRKSERDEALLDEEREEEDDEAGGDALRARHQRLLVRQQRHGGADAP 558
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,266,243
Number of Sequences: 37544
Number of extensions: 229657
Number of successful extensions: 806
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -