Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J03
         (858 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39918| Best HMM Match : WAPL (HMM E-Value=1.8)                      64   3e-22
SB_49457| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  

>SB_39918| Best HMM Match : WAPL (HMM E-Value=1.8)
          Length = 653

 Score = 63.7 bits (148), Expect(2) = 3e-22
 Identities = 27/56 (48%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
 Frame = +3

Query: 180 KKGVVFATYSSLIGETASNNTKYRSRLKQLLQWCG-EDFDGVIVFDECHKAKNLCP 344
           K+GVVF+TY++L+       ++ ++RL+QL+ WCG E FDG ++FDE HKAK+  P
Sbjct: 81  KEGVVFSTYATLVSSVQKGGSR-QTRLQQLMDWCGGETFDGCLIFDESHKAKHFIP 135



 Score = 60.1 bits (139), Expect(2) = 3e-22
 Identities = 26/58 (44%), Positives = 36/58 (62%)
 Frame = +3

Query: 462 AYMVRLGIWGEGTPFPTFMDFINAVXXRGVGAMXIXAMDXXLXXMYIXRXLSFXGXSF 635
           A+M RLG+WGEGT F +F  F+ ++  RG+GA  + AM+     MY+ R LSF    F
Sbjct: 136 AFMERLGLWGEGTAFKSFESFLESITKRGLGAAEMLAMEMKASGMYVSRGLSFRQAEF 193


>SB_49457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = +3

Query: 168 NGNVKKGVVFATYSSLIGETASNNTKYRSRLKQLLQWCGEDFDGVIVFDECHKAKNLCPV 347
           + +V   ++  T S+L+G+ A  +T Y  + + L + C     G      C+K    CP 
Sbjct: 4   DASVNFAIILNTRSALVGQRALTDTGYVCQSRGLSKLCSPCMPGTYWRVRCYK----CPA 59

Query: 348 GSGKATKTGLTA 383
           G   A   G  A
Sbjct: 60  GKMFARSVGYQA 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,004,675
Number of Sequences: 59808
Number of extensions: 224550
Number of successful extensions: 754
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)