Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J03
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali...   270   6e-73
Z46787-11|CAA86750.1|  610|Caenorhabditis elegans Hypothetical p...    28   7.4  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    28   9.8  

>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
           pathway homologprotein 1 protein.
          Length = 1451

 Score =  270 bits (663), Expect = 6e-73
 Identities = 133/220 (60%), Positives = 153/220 (69%), Gaps = 1/220 (0%)
 Frame = +3

Query: 54  VSNDLKYDAERDLRDIGAGKIEVYPLNKFKYAKISSAVNGNVKKGVVFATYSSLIGET-A 230
           VS+DLK+DAERDLRD GA  I VY LNK KYAKIS   NG++KKGV+FATY+SLIGE   
Sbjct: 330 VSSDLKFDAERDLRDCGAPNIPVYALNKMKYAKISGKENGSIKKGVMFATYTSLIGECRG 389

Query: 231 SNNTKYRSRLKQLLQWCGEDFDGVIVFDECHKAKNLCPVGSGKATKTGLTALELQNKLPK 410
           + + KYRSR+ QL+QW G+D+DGVI+ DECH+AKNL P    K TKTG   LELQ  LP 
Sbjct: 390 AKSRKYRSRISQLIQWFGQDYDGVIILDECHRAKNLVPTAGAKPTKTGRMVLELQKALPN 449

Query: 411 ARVVYASATGASEPRNMAYMVRLGIWGEGTPFPTFMDFINAVXXRGVGAMXIXAMDXXLX 590
           ARVVYASATGA+EPRNMAYM RLG+WGE   FP F DFI+AV  RGVGAM I AMD    
Sbjct: 450 ARVVYASATGATEPRNMAYMTRLGLWGERQAFPEFHDFISAVERRGVGAMEIVAMDMKQR 509

Query: 591 XMYIXRXLSFXGXSFRXXXVPXSXXFXXTXXXXXXXWVXA 710
            +Y+ R LSF G SF    V  S  F          W+ A
Sbjct: 510 GLYLARQLSFRGVSFAVQEVQLSSEFVKMYDAAVKLWMEA 549



 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/14 (78%), Positives = 14/14 (100%)
 Frame = +2

Query: 11  ENYIKGRKRAIWVS 52
           ENY++GRKRAIW+S
Sbjct: 316 ENYLQGRKRAIWLS 329


>Z46787-11|CAA86750.1|  610|Caenorhabditis elegans Hypothetical
           protein C16C10.12 protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +3

Query: 156 SSAVNGNVKKGVVFATYSSLIGETASNNTKYRSRLKQLLQWCGEDFDGVIV 308
           S A+   V    +FA  S L G T  NN     R  Q   WC   F+G++V
Sbjct: 502 SLAIAFAVPASGLFALLSGLYGNT--NNFPVYIRWMQWTSWCRYGFEGLVV 550


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 308  IRRVSQGKEPLPRRLREGDED 370
            +R V Q  EPL RRL E D+D
Sbjct: 2509 VRHVEQNPEPLARRLFEEDDD 2529


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,019,070
Number of Sequences: 27780
Number of extensions: 161427
Number of successful extensions: 556
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)