Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J03
         (858 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79350.1 68414.m09247 DNA-binding protein, putative contains ...   221   5e-58
At3g11390.1 68416.m01387 DC1 domain-containing protein contains ...    30   2.3  
At1g75450.1 68414.m08764 FAD-binding domain-containing protein /...    29   4.0  
At1g13990.1 68414.m01650 expressed protein                             28   9.1  

>At1g79350.1 68414.m09247 DNA-binding protein, putative contains
           Pfam PF00628: PHD-finger domain; contains TIGRFAMS
           TIGR01053: zinc finger domain, LSD1 subclass; contains
           Pfam PF00271: Helicase conserved C-terminal domain;
           similar to WSSV086 (GI:19481678)[shrimp white spot
           syndrome virus]; similar to nuclear protein Np95
           (GI:17939938) [Mus musculus]
          Length = 1299

 Score =  221 bits (540), Expect = 5e-58
 Identities = 103/194 (53%), Positives = 137/194 (70%)
 Frame = +3

Query: 54  VSNDLKYDAERDLRDIGAGKIEVYPLNKFKYAKISSAVNGNVKKGVVFATYSSLIGETAS 233
           + +DLKYDA RDL D+GA  + V PLNK  Y+K+ S  N  +K+GVVF TY+SLI    +
Sbjct: 309 IGSDLKYDARRDLDDVGATCVGVNPLNKLPYSKLDSK-NVGIKEGVVFLTYNSLI----A 363

Query: 234 NNTKYRSRLKQLLQWCGEDFDGVIVFDECHKAKNLCPVGSGKATKTGLTALELQNKLPKA 413
           ++ K RSRL+QL+QWCG +FDG+++FDECHKAKNL P    + T+ G   +++Q+K+P+A
Sbjct: 364 SSEKGRSRLQQLVQWCGPEFDGLLIFDECHKAKNLVPEAGSQPTRIGQAVVDIQDKIPQA 423

Query: 414 RVVYASATGASEPRNMAYMVRLGIWGEGTPFPTFMDFINAVXXRGVGAMXIXAMDXXLXX 593
           RV+Y SATGASEPRNM YMVRLG+WG GT F  F  F+ A+   G GA+ + AMD     
Sbjct: 424 RVIYCSATGASEPRNMGYMVRLGLWGAGTSFSDFNKFLGALDKGGTGALELVAMDMKARG 483

Query: 594 MYIXRXLSFXGXSF 635
           MY+ R LS+ G  F
Sbjct: 484 MYVCRTLSYKGAEF 497


>At3g11390.1 68416.m01387 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 168 NGNVKKGVVFATYSSLIGETASNNTKYRSRLKQLLQWCGEDFDG 299
           N +V      ++YS+L G   S++ K+ S       WCG+   G
Sbjct: 199 NIDVSFSTTLSSYSNLPGSNKSDHNKFESTESDQCTWCGKYIQG 242


>At1g75450.1 68414.m08764 FAD-binding domain-containing protein /
           cytokinin oxidase family protein similar to GB:CAA77151
           from [Zea mays] [SP|Q9T0N8] (Plant J. 17 (6), 615-626
           (1999))
          Length = 540

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +3

Query: 105 AGKIEVYPLNKFKYAKISSAVNGNVKKGVVFATYSSLI--GETASNNTKYRSRLKQLLQW 278
           +G I +YP+NK K+ + SSAV  + +   + A   S +  GE        + + +++L++
Sbjct: 409 SGPILIYPMNKDKWDERSSAVTPDEEVFYLVALLRSALTDGEETQKLEYLKDQNRRILEF 468

Query: 279 C 281
           C
Sbjct: 469 C 469


>At1g13990.1 68414.m01650 expressed protein
          Length = 277

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +3

Query: 231 SNNTKYRSRLKQLLQWCGEDF-DGVIVFDECHKAKNLCPV--GSGKATKTGLTALE 389
           SN TK ++R K       ED  DGV+VF++ ++A   C +  G GK  + G+  +E
Sbjct: 176 SNQTK-QARPKTKFDMLVEDIRDGVLVFEDVNEAVRYCDLLQGGGKGCE-GVAEIE 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,740,080
Number of Sequences: 28952
Number of extensions: 158165
Number of successful extensions: 497
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)