Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_J01
(1038 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24) 41 0.001
SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 40 0.004
SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 39 0.006
SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41) 38 0.018
SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24) 38 0.018
SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24) 37 0.023
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.031
SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3) 36 0.054
SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002) 35 0.12
SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08) 34 0.16
SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 33 0.29
SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.38
SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 33 0.38
SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 32 0.87
SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.87
SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.5
SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0) 29 6.2
SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05) 29 6.2
SB_32413| Best HMM Match : HEAT (HMM E-Value=0.00039) 29 6.2
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92) 29 8.1
>SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24)
Length = 478
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 319 MNWIDKRXSWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 432
+ W++ SWNA E+G +T V +RLW PD+VL N A
Sbjct: 77 VKWVNPSLSWNASEFGGVNTLHVEPDRLWVPDIVLYNNA 115
>SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 716
Score = 39.5 bits (88), Expect = 0.004
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +1
Query: 325 WIDKRXSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAGD--YALRARVSNNGSGL 492
W + SWNA E+G S + ++LW+PD+ L N A ++A Y +A++ + +GL
Sbjct: 119 WKNPLLSWNASEYGGISQVNLEPDQLWKPDIYLYNNADSSADGSLYGFKAKIKVSHTGL 177
>SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 541
Score = 39.1 bits (87), Expect = 0.006
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +1
Query: 271 NIRESESTVRILADLQMNWIDKRXSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAG 447
++ E + + I ++ W D WN ++G + ++ +R+W+PDV+L N A+T
Sbjct: 70 DLNERDQILTINVWIRQYWKDHLLKWNPDDFGGIKSINIAPDRVWKPDVLLYNRASTDLR 129
Query: 448 DYALRARVSNN 480
+L ++ N
Sbjct: 130 FGSLNNKIDTN 140
Score = 33.9 bits (74), Expect = 0.22
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 271 NIRESESTVRILADLQMNWIDKRXSWNAGEW-GCSTWLVSSERLWRPDVVLLN 426
++ E E + ++ W D WN ++ G + +++ +++W+PDV+L N
Sbjct: 488 DLDEREQILTTNVWIRQYWADHFLQWNPDDFSGIKSIIIAPDKVWKPDVLLFN 540
>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
Length = 342
Score = 37.5 bits (83), Expect = 0.018
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 280 ESESTVRILADLQMNWIDKRXSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 432
E ++ L+ W D R +WN E+ G + S+ +W PD+ +LN+A
Sbjct: 32 EKNEVIQTFLILEQMWNDTRLAWNETEYGGIKQMTLRSKLIWTPDISVLNSA 83
>SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)
Length = 445
Score = 37.5 bits (83), Expect = 0.018
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 298 RILADLQMNWIDKRXSWNAGEWG-CSTWLVSSERLWRPDVVLLNA 429
+++ + + W + SWNA E+G S VS +R W PD++L N+
Sbjct: 16 KLIRIIAVRWTNPDLSWNASEYGGVSQIYVSPKRPWTPDILLYNS 60
>SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24)
Length = 373
Score = 37.1 bits (82), Expect = 0.023
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 271 NIRESESTVRILADLQMNWIDKRXSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 432
++ + T+ ++ ++ W D R WN + G ++ + RLW PD+ L N A
Sbjct: 51 DVNKRAQTMTVVIWVRQYWRDPRLRWNVSAYDGVDNIVIKASRLWLPDITLYNNA 105
>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 36.7 bits (81), Expect = 0.031
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +1
Query: 292 TVRILADLQMNWIDKRXSWNAGEWGCSTWLVSSER--LWRPDVVLLNAA 432
T+R+ ++ W D + W+ ++G +V ER +W PDVVLLN A
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLNNA 80
>SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3)
Length = 79
Score = 35.9 bits (79), Expect = 0.054
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 292 TVRILADLQMNWIDKRXSWNAGEWGCSTWLVSSER--LWRPDVVLLN 426
T+R+ ++ W D + W+ ++G +V ER +W PDVVLLN
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLN 78
>SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002)
Length = 123
Score = 34.7 bits (76), Expect = 0.12
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 313 LQMNWIDKRXSWNAGEWGCSTWL-VSSERLWRPDVVLLN 426
++MNW + WNA E+G L +S +W PD+VL N
Sbjct: 84 VRMNWNNHLLRWNASEYGGIDKLNISPTLMWLPDIVLHN 122
>SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08)
Length = 362
Score = 34.3 bits (75), Expect = 0.16
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 313 LQMNWIDKRXSWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 432
+ + W D R WN ++G +++ S +LW PD+ L N A
Sbjct: 276 IDLYWTDFRLRWNHTKYGGIKSFVTPSRQLWLPDITLYNNA 316
>SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 548
Score = 33.5 bits (73), Expect = 0.29
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 256 HLRHANIRESESTVRILADLQMNWIDKRXSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 432
HLR + V + ++ W + +WN ++ G + ++ ++W PD++L N A
Sbjct: 106 HLRFDISEQQAQLVTVSVWIRQKWTNPMLAWNTSKYGGIESVNLNPAKVWIPDIILYNNA 165
Query: 433 ATT 441
T
Sbjct: 166 DET 168
>SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 33.1 bits (72), Expect = 0.38
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = +1
Query: 265 HANIRESESTVRILADLQMNWIDKRXSWNAGEW-GCSTWLVSSERLWRPDVVLL-NAAAT 438
H + + TV L W D +WN ++ G + V +W PD+VL N +
Sbjct: 199 HQQLMGAPVTVACFLPLLQKWYDPWLTWNESDFGGMKSIKVDPSCVWVPDIVLYNNVDSD 258
Query: 439 TAGD-YALRARVSNNGSG 489
++G+ Y +V+ + G
Sbjct: 259 SSGEMYKFTTKVNIHSDG 276
>SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 422
Score = 33.1 bits (72), Expect = 0.38
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 313 LQMNWIDKRXSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAAT 438
+++ W D +WN ++G + V +W+PD++L N A+T
Sbjct: 26 IRLYWKDHLLNWNPEDFGGVKSINVEPNNVWKPDILLYNPAST 68
>SB_59781| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 275
Score = 31.9 bits (69), Expect = 0.87
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +1
Query: 313 LQMNWIDKRXSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAAT--TAGDYALRARVSNNG 483
+ + W + +WN E+G + + LW+PD+ L N A + Y A++ N
Sbjct: 44 MDVKWENPLVAWNKSEYGGIVQVNLDPSTLWKPDIYLYNNADSGYDGSLYGFTAKIKVNY 103
Query: 484 SG 489
SG
Sbjct: 104 SG 105
>SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 930
Score = 31.9 bits (69), Expect = 0.87
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 313 LQMNWIDKRXSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 432
L+M W D WN ++G T + + + +W P V++ N A
Sbjct: 547 LRMGWKDAFLQWNPADYGGVTQINLEASDIWTPPVIIYNQA 587
>SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 29.9 bits (64), Expect = 3.5
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 313 LQMNWIDKRXSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 432
+ + W + +W+ +G T + V R+WRPD++L N A
Sbjct: 75 IDLKWNNPLLTWDPTHFGNLTSINVDPLRVWRPDLILYNNA 115
>SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0)
Length = 360
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 373 TWLVSSERLWRPDVVLLNAAATTAGDYAL-RARVSNNG 483
TWL+ +WRPD+VL +A D L R ++++NG
Sbjct: 272 TWLLD---MWRPDIVLYDAGVDPHVDDVLGRLKLTDNG 306
>SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05)
Length = 191
Score = 29.1 bits (62), Expect = 6.2
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 292 TVRILADLQMNWIDKRXSWNAGEWG-CSTWLVSSERLWRPDVVLLN 426
+VR+ +++ W + WN ++G T V+ +W PD+VL N
Sbjct: 87 SVRLNKLVEVKWENPFLVWNESDYGGVHTLHVTFNDVWVPDIVLYN 132
>SB_32413| Best HMM Match : HEAT (HMM E-Value=0.00039)
Length = 695
Score = 29.1 bits (62), Expect = 6.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 446 GTTLSAPVYLITAPVSXIKRLDISTPISMQLD 541
GT PVY I+ P + IK D+S IS ++D
Sbjct: 112 GTRYVLPVYCISQPTNLIKDDDVSGDISNEVD 143
>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 29.1 bits (62), Expect = 6.2
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Frame = +1
Query: 313 LQMNWIDKRXSWNAGEWGCSTWL-VSSERLWRPDVVLLN--AAATTAGDYAL--RARVSN 477
+ + W++ +W+ +G T + V+ +W+PD+VL + T Y RA + +
Sbjct: 64 INLRWVNPFLTWDPKMYGGLTSINVNPNMIWKPDIVLYHNIGFGETGAIYKFDTRATIMH 123
Query: 478 NG 483
NG
Sbjct: 124 NG 125
>SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92)
Length = 88
Score = 28.7 bits (61), Expect = 8.1
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 325 WIDKRXSWNAGEWG-CSTWLVSSERLWRPDVVL 420
W + +WN E+G T VS +W PD+VL
Sbjct: 53 WYNPLLTWNVTEYGGLKTINVSPTIIWLPDIVL 85
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,887,296
Number of Sequences: 59808
Number of extensions: 402100
Number of successful extensions: 1037
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3106636966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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