Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_J01
(1038 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 45 1e-06
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 45 1e-06
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 44 2e-06
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 42 7e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 42 7e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 42 7e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 42 7e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 42 7e-06
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 42 1e-05
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 39 8e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 38 1e-04
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 38 2e-04
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 38 2e-04
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 38 2e-04
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 38 2e-04
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 36 6e-04
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 36 6e-04
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 33 0.003
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 30 0.030
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 26 0.48
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 44.8 bits (101), Expect = 1e-06
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1
Query: 271 NIRESESTVRILADLQMNWIDKRXSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 444
++ E + A L++ W+D WN E+ G ++ +LW+PD+++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 445 GDYALRARVSNNGSGL 492
G Y V++NGS L
Sbjct: 153 GTYQTNVVVTHNGSCL 168
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 44.8 bits (101), Expect = 1e-06
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1
Query: 271 NIRESESTVRILADLQMNWIDKRXSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 444
++ E + A L++ W+D WN E+ G ++ +LW+PD+++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 445 GDYALRARVSNNGSGL 492
G Y V++NGS L
Sbjct: 153 GTYQTNVVVTHNGSCL 168
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 44.4 bits (100), Expect = 2e-06
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1
Query: 271 NIRESESTVRILADLQMNWIDKRXSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 444
++ E + A L++ W+D WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 445 GDYALRARVSNNGSGL 492
G Y V++NGS L
Sbjct: 85 GTYQTSVVVTHNGSCL 100
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 42.3 bits (95), Expect = 7e-06
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1
Query: 271 NIRESESTVRILADLQMNWIDKRXSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 444
++ E + A L++ W+D WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 445 GDYALRARVSNNGSGL 492
G Y V+++GS L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 42.3 bits (95), Expect = 7e-06
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1
Query: 271 NIRESESTVRILADLQMNWIDKRXSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 444
++ E + A L++ W+D WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 445 GDYALRARVSNNGSGL 492
G Y V+++GS L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 42.3 bits (95), Expect = 7e-06
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1
Query: 271 NIRESESTVRILADLQMNWIDKRXSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 444
++ E + A L++ W+D WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 445 GDYALRARVSNNGSGL 492
G Y V+++GS L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 42.3 bits (95), Expect = 7e-06
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1
Query: 271 NIRESESTVRILADLQMNWIDKRXSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 444
++ E + A L++ W+D WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 445 GDYALRARVSNNGSGL 492
G Y V+++GS L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 42.3 bits (95), Expect = 7e-06
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +1
Query: 271 NIRESESTVRILADLQMNWIDKRXSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 444
++ E + A L++ W+D WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 445 GDYALRARVSNNGSGL 492
G Y V+++GS L
Sbjct: 85 GTYQTSVVVTHDGSCL 100
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 41.5 bits (93), Expect = 1e-05
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +1
Query: 313 LQMNWIDKRXSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 486
L++ W D WN ++G L + RLW+PDV++ N+A G Y V NNG+
Sbjct: 76 LKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
Query: 487 GL 492
L
Sbjct: 136 CL 137
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 38.7 bits (86), Expect = 8e-05
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 313 LQMNWIDKRXSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 432
L+ W D + W+ E+G T L V SE +W PD+VL N A
Sbjct: 73 LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNA 113
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 38.3 bits (85), Expect = 1e-04
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 313 LQMNWIDKRXSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 432
++ +W D + W+ E+G L V S+ +WRPD+VL N A
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA 117
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 37.5 bits (83), Expect = 2e-04
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 313 LQMNWIDKRXSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 432
++ +W D + W E+G L V S+ +WRPD+VL N A
Sbjct: 81 VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 37.5 bits (83), Expect = 2e-04
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 313 LQMNWIDKRXSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 432
++ +W D + W E+G L V S+ +WRPD+VL N A
Sbjct: 81 VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 37.5 bits (83), Expect = 2e-04
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 313 LQMNWIDKRXSWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 432
++ W D + WN ++G T V SE +W PD+VL N A
Sbjct: 73 VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA 113
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 37.5 bits (83), Expect = 2e-04
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 313 LQMNWIDKRXSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 432
++ W D + WN E+G L V SE +W PD+VL N A
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 35.9 bits (79), Expect = 6e-04
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 271 NIRESESTVRILADLQMNWIDKRXSWNAGEWG-CSTWLVSSERLWRPDVVLLNAAATTAG 447
N+ E ++ L+ W D + W+ ++G + +++W+PD+VL N A G
Sbjct: 65 NVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNA---DG 121
Query: 448 DYALR 462
+Y +R
Sbjct: 122 NYEVR 126
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 35.9 bits (79), Expect = 6e-04
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 325 WIDKRXSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 432
W D WNA E+ G V R+WRPD +L N A
Sbjct: 62 WTDHHLKWNASEFAGIRVIRVPYNRVWRPDTILYNNA 98
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 33.5 bits (73), Expect = 0.003
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 259 LRHANIRESESTVRILADLQMNWIDKRXSWNAGEW-GCSTWLVSSERLWRPDVVL 420
++H N+ E TV L++ W +W + E+ ++ V S +W PD+V+
Sbjct: 68 IQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 30.3 bits (65), Expect = 0.030
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +1
Query: 274 IRESESTVRILADLQMNWIDKRXSWNAGEWGCSTWLVSSERLWRPDVVLLN 426
I E + T + + +W+D+R ++ G+ + + R+W+PD N
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 26.2 bits (55), Expect = 0.48
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 316 QMNWIDKRXSWNAGEWGCSTWLVSSERLWRPDVVLLN 426
+ +W D R S+ S + ER+WRPD N
Sbjct: 90 RQSWRDSRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,106
Number of Sequences: 438
Number of extensions: 3992
Number of successful extensions: 48
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 34463286
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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