Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_J01
         (1038 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t...    31   0.95 
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t...    31   0.95 
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t...    30   2.9  
At3g24550.1 68416.m03083 protein kinase family protein contains ...    29   5.1  
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF...    28   8.8  
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF...    28   8.8  

>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
            protodermal factor 1 [Arabidopsis thaliana]
            gi|4929130|gb|AAD33869
          Length = 306

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -2

Query: 1010 THXXPPTNXXTPPXSXKPSEPXXXNTXAXXPDPXXPVTAXXXTPHXXXKXP 858
            +H  P +N  +PP    PS P   +  +  P P  P  +   TPH     P
Sbjct: 50   SHTPPSSNCGSPPYDPSPSTPSHPSPPSHTPTPSTP--SHTPTPHTPSHTP 98


>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
            protodermal factor 1 [Arabidopsis thaliana]
            gi|4929130|gb|AAD33869
          Length = 306

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -2

Query: 1010 THXXPPTNXXTPPXSXKPSEPXXXNTXAXXPDPXXPVTAXXXTPHXXXKXP 858
            +H  P +N  +PP    PS P   +  +  P P  P  +   TPH     P
Sbjct: 50   SHTPPSSNCGSPPYDPSPSTPSHPSPPSHTPTPSTP--SHTPTPHTPSHTP 98


>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
           Lycopersicon esculentum, proline-rich cell wall protein
           [Medicago sativa] GI:3818416; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 428

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/47 (29%), Positives = 16/47 (34%)
 Frame = -2

Query: 998 PPTNXXTPPXSXKPSEPXXXNTXAXXPDPXXPVTAXXXTPHXXXKXP 858
           PPT    PP + KP  P         P P  P      TP+     P
Sbjct: 132 PPTPYTPPPPTVKPPPPPVVTPPPPTPTPEAPCPPPPPTPYPPPPKP 178


>At3g24550.1 68416.m03083 protein kinase family protein contains Pfam
            domain PF00069: Protein kinase domain
          Length = 652

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/45 (28%), Positives = 16/45 (35%)
 Frame = -2

Query: 1013 TTHXXPPTNXXTPPXSXKPSEPXXXNTXAXXPDPXXPVTAXXXTP 879
            T    PP +   PP    PS P         P P  P+T    +P
Sbjct: 49   TNSTSPPPSSPLPPSLPPPSPPGSLTPPLPQPSPSAPITPSPPSP 93


>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 466 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 377
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
           subunit region (PF03178); contains weak WD-40 repeat
           (PF00400); similar to Splicing factor 3B subunit 3
           (SF3b130)/spliceosomal protein/Splicing factor 3B
           subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
           EMBL:HSAJ1443_1
          Length = 1214

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 466 GRGERSPRRWLQPRLAVPRQASTSVPRTPA 377
           GRG RS  R L+P LA+   A + +P  P+
Sbjct: 426 GRGPRSSLRILRPGLAITEMAVSQLPGQPS 455


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,992,281
Number of Sequences: 28952
Number of extensions: 288794
Number of successful extensions: 792
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2550178448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)