Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_I24
         (936 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    39   0.001
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    29   1.2  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   5.0  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 26/74 (35%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = +2

Query: 674 LXLXXCXXXFFFXSVFXXVFFFX-SXLFXLXVXFFCFFLVXGSXXSCFFLFLCYIFSXXF 850
           L L  C   FFF  +F   F F  S LF L   F  +F         FF FLC      F
Sbjct: 110 LSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSF 169

Query: 851 XFSFAFXXLLIXLF 892
            FS +    L  LF
Sbjct: 170 LFSLSHLLSLAILF 183



 Score = 29.5 bits (63), Expect = 0.71
 Identities = 20/72 (27%), Positives = 23/72 (31%)
 Frame = +1

Query: 568 FXXCFXFFXXXVFXXFFXYRFLFLFXXFXLXXXXVSXSXFXXXFXFFXLCFXVXXFFSFX 747
           F     FF   +F   F + F FLF    +     S         FF LC  V   F F 
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFS 172

Query: 748 SLXXXXXFFLFL 783
                    LFL
Sbjct: 173 LSHLLSLAILFL 184



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 812 FFLFLCYIFSXXFXFSFAFXXLLIXLFXGSXF 907
           FF FL +  S  F FSF F    I +   S F
Sbjct: 119 FFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSF 150


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 223 VRVHRADTGRSSNEXDRQTTELERRGMGL-QHLAG 324
           +R H+   GR+  E DR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 301 FPCVPTQSFVDPIHLKICQYPHGGL 227
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,323
Number of Sequences: 5004
Number of extensions: 38876
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)