Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_I23
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    28   2.1  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    27   2.8  
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom...    26   6.5  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    26   6.5  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   8.6  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    26   8.6  

>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 54  FYSNIFRKLILWFTIF 7
           FYS I +KL  WFT+F
Sbjct: 78  FYSTIIKKLTPWFTVF 93


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 428 GRRGRAPCAPLGPSLVAIML 369
           GRRGR    PLGP LV I +
Sbjct: 292 GRRGRREKTPLGPRLVGICM 311


>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 215 QRALEVRLVAFFALLHVSPALISTGRW 135
           QRA+ V  V  +ALL+ S A    GRW
Sbjct: 179 QRAVSVHCVQTYALLYSSLAKFWDGRW 205


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +2

Query: 461 SSTPRLLDPLDSAGFFWAARRAASTTNVMFTSAPLTRRASAXAT*LFRTP 610
           SST  LL PLD+  F   + +  ST   + T   L+R  S   T L  TP
Sbjct: 239 SSTASLLSPLDTTSF---STKLDSTILALETDESLSRTISYATTSLPSTP 285


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
 Frame = +2

Query: 485 PLDSAGFFWAARRAASTTNVMFTS--APLTR---RASAXAT*LFRTPTLKDEPDRQPAPA 649
           P+ +  F    +  +S+  V FTS   P T     AS     +   P  +  PD  P P 
Sbjct: 146 PMSTTDFVGYEQGNSSSKFVQFTSYAIPATNDVCNASGIPLGMIVQPFAELRPDEAPVPV 205

Query: 650 VDVXGASPXR 679
           VD   ++P R
Sbjct: 206 VDNTNSNPPR 215


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 308 VSECVEERKRAIWEASISRREALLQREKD 394
           VSE     K A W+A +S  EA+LQ   D
Sbjct: 659 VSEYFHLLKEAYWDAPLSLVEAVLQNRTD 687


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,353
Number of Sequences: 5004
Number of extensions: 38469
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)