Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_I23
(924 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 31 1.7
06_03_0024 - 15563574-15563632,15563887-15563914,15564017-155642... 30 2.3
10_08_0380 - 17391427-17391435,17392026-17392097,17392215-173923... 30 3.0
03_06_0240 + 32584589-32585092 30 3.0
10_04_0020 + 7644329-7644666,7644960-7645146,7645311-7645365,764... 29 5.2
04_04_1106 - 30948626-30948724,30948841-30949176,30949231-309493... 29 5.2
03_04_0243 + 19298293-19299117 29 5.2
01_05_0166 + 18844468-18845184,18847394-18847690 29 5.2
10_08_0418 - 17779499-17780952,17781177-17782017 29 6.9
02_03_0052 - 14456925-14457176,14457277-14457437,14457843-144579... 29 6.9
05_03_0099 + 8382050-8382484 28 9.1
03_06_0316 + 33091194-33091370,33091451-33092155 28 9.1
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001... 28 9.1
>04_04_1105 -
30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 30.7 bits (66), Expect = 1.7
Identities = 27/104 (25%), Positives = 43/104 (41%)
Frame = -2
Query: 527 PPCALPRRIRPNLADPGAAVSKNRKRTPVGAKTGRRGRAPCAPLGPSLVAIMLRAGIWTL 348
P CA P+ + P+L + P GA R R PC G L+++ +
Sbjct: 46 PDCATPQSLPPDLMPAPPPPRRRALPLPRGAADARGARLPCGSCG-ELLSVPVGLSRCAC 104
Query: 347 PILHVFVLPHIH*PVVVCRRLLLSARPASVSGPRLVSLSAPVRP 216
P+ + + P + +L SA A+V P V+ AP +P
Sbjct: 105 PLCGAELAVY---PARLRNYILSSAATAAVPVPVPVA-PAPAQP 144
>06_03_0024 -
15563574-15563632,15563887-15563914,15564017-15564202,
15564283-15564332,15564435-15564691,15564772-15564910,
15565627-15565716,15567354-15567663
Length = 372
Score = 30.3 bits (65), Expect = 2.3
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +3
Query: 390 RTERSAWSAPAPPGLRPDRRSLSVLRHRGSWI 485
RT R S P PPGLR R LRH G+W+
Sbjct: 34 RTPRRDPSKPPPPGLRLVAR--GKLRHHGTWL 63
>10_08_0380 -
17391427-17391435,17392026-17392097,17392215-17392310,
17393355-17393480,17393783-17393840,17394234-17394289,
17394889-17394966,17395053-17395157,17395285-17395393,
17395572-17395705
Length = 280
Score = 29.9 bits (64), Expect = 3.0
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -2
Query: 404 APLGPSLVA-IMLRAGIWTLPILHVFVLPHIH*PVVVCRRLLLSARPASVSGPRLVSLSA 228
AP + A + LR + + HVF LPH P+VV R LSA PA G +V+ ++
Sbjct: 5 APASATAAASLFLRRSLSSSSPRHVF-LPHWVAPIVVARPARLSAVPAKRGGGGVVAAAS 63
>03_06_0240 + 32584589-32585092
Length = 167
Score = 29.9 bits (64), Expect = 3.0
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -2
Query: 548 TSRSLLMPPCALPRRIRPNLADPGAAVSKNRKRTPVGAKTGRRGRAPCAPLGPSLV-AIM 372
T + PP +P P + + GAA + P+ G+R A AP P V + M
Sbjct: 80 TGKPPAAPPVMMPAYDAPAMVEQGAAAACGAGGDPLLLTLGQRQAAASAPAQPPAVPSPM 139
Query: 371 LRAGIWTLP 345
+ AG+ P
Sbjct: 140 MAAGMLLSP 148
>10_04_0020 +
7644329-7644666,7644960-7645146,7645311-7645365,
7645390-7645438,7645984-7646200
Length = 281
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 527 PPCA-LPRRIRPNLADPGAAVSKNRKRTP 444
P C+ P R+RP+LA P A R+R P
Sbjct: 5 PACSGCPPRVRPHLAPPKAKAETRRRREP 33
>04_04_1106 -
30948626-30948724,30948841-30949176,30949231-30949353,
30949425-30949517,30949603-30949806,30949884-30950134,
30951011-30952391,30952737-30953174
Length = 974
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -2
Query: 533 LMPPCALPRRIRPNLADPGAAVSKNRKRTPVGAKTGRRGRAPCAPLGPSL 384
+ P CA+P+ + P L P + P GA R R PC G L
Sbjct: 41 ICPDCAMPQSLPPELMPP-PPPRRKALPLPRGAADVRGARLPCGACGALL 89
>03_04_0243 + 19298293-19299117
Length = 274
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +1
Query: 406 HGARPRRPVFAPTGVRFRFFDTAAPGSARFGRILLGSA 519
H P RP + FF AAP SAR G +LL S+
Sbjct: 86 HPHPPPRPCLLSAHLASSFFSAAAPKSARRGDLLLVSS 123
>01_05_0166 + 18844468-18845184,18847394-18847690
Length = 337
Score = 29.1 bits (62), Expect = 5.2
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +2
Query: 92 DDVRNINETAESKEAIDRSRLARGRREAEQRKRLDELR 205
+D R ++ +KEA R L R RRE E+R+R ELR
Sbjct: 74 EDYRK-DKLKRAKEAEVRKELERRRREEEERERERELR 110
>10_08_0418 - 17779499-17780952,17781177-17782017
Length = 764
Score = 28.7 bits (61), Expect = 6.9
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -2
Query: 527 PPCALPRRIRPNLADPGAAVSKNRKRTPVGAKTGRRGRAPCAPLGPSLVAIM 372
PPC LPR + PG K ++ V K +R PC G S + ++
Sbjct: 598 PPCRLPRFNFGPIGPPGERDPKKYQKRVVRNKYRKRKIEPCHRHGESRITLL 649
>02_03_0052 -
14456925-14457176,14457277-14457437,14457843-14457914,
14458105-14458221,14458310-14458322,14458917-14458946,
14459837-14460010,14460276-14460417,14460731-14460792,
14461047-14461643
Length = 539
Score = 28.7 bits (61), Expect = 6.9
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Frame = -2
Query: 542 RSLLMPPCALPRRIRPNLADPGAAVSKN-----RKRTPVGAKTGRR-GRAPCAPLGPSLV 381
R + PP A P P LA G S R+R G + GRR GR C+P+ P+
Sbjct: 12 RRVRPPPVATPSS-DPRLAAAGTGASTPPPPLPRRRMWSGWRWGRRRGRGACSPVDPA-- 68
Query: 380 AIMLRAG-IWTL 348
+L AG +W L
Sbjct: 69 --VLEAGLVWRL 78
>05_03_0099 + 8382050-8382484
Length = 144
Score = 28.3 bits (60), Expect = 9.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 387 RRTERSAWSAPAPPGLRPDRRSLSVLRHRGSWIR 488
R + R W A APP +R +RR R +G R
Sbjct: 85 RGSRRMRWEALAPPPVRDERRRRRATRQQGEAAR 118
>03_06_0316 + 33091194-33091370,33091451-33092155
Length = 293
Score = 28.3 bits (60), Expect = 9.1
Identities = 22/75 (29%), Positives = 30/75 (40%)
Frame = +2
Query: 521 RAASTTNVMFTSAPLTRRASAXAT*LFRTPTLKDEPDRQPAPAVDVXGASPXRTXXXPVX 700
+AA+ T TSAP R A A T + KD P ++ APA A+ +
Sbjct: 221 KAAAVTKTKATSAPARRPAKAAKT------SAKDTPSKKAAPAAKKPAAAAKKAPAKKAA 274
Query: 701 WAXPPXRXSRXXXAR 745
A +R AR
Sbjct: 275 PAKKAAAPARKVPAR 289
>01_05_0147 +
18597194-18597643,18598347-18598681,18600073-18600147,
18600325-18600427,18601554-18601642,18602953-18603064,
18604093-18604146,18604271-18604319,18606236-18606347,
18606389-18606436,18607000-18607327
Length = 584
Score = 28.3 bits (60), Expect = 9.1
Identities = 22/55 (40%), Positives = 25/55 (45%)
Frame = +3
Query: 411 SAPAPPGLRPDRRSLSVLRHRGSWIR*IRPDSSGQRAGRHQQRT*CSHLRRSRDE 575
S+ + P PDRRS S R GS R SS R RH RRSRD+
Sbjct: 42 SSASSPSRSPDRRSRS--RSSGSKRR---KASSSSRRHRHHHHKSSGRSRRSRDD 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,216,972
Number of Sequences: 37544
Number of extensions: 329599
Number of successful extensions: 1201
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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