Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_I23
(924 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 31 1.7
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 31 1.7
SB_5236| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_51317| Best HMM Match : E-MAP-115 (HMM E-Value=0.58) 29 4.0
SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 29 7.0
SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077) 28 9.3
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_26266| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 28 9.3
SB_23854| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 345 GKRPYPGAKHYCNERRTERSAWSAPAPPGLRPDRRSLS 458
G P P ++H ERS+ P PPG P +RSL+
Sbjct: 193 GPPPPPHSRHGSAPPPPERSSGPPPPPPGRGPSQRSLA 230
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 345 GKRPYPGAKHYCNERRTERSAWSAPAPPGLRPDRRSLS 458
G P P ++H ERS+ P PPG P +RSL+
Sbjct: 105 GPPPPPHSRHGSAPPPPERSSGPPPPPPGRGPSQRSLA 142
>SB_5236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 521 CALPRRIRPNLADPGA-AVSKNRKRTPVGAKTGRRGRAPCAP 399
C RR+R AD G VS N +RT + K+ RRGR P P
Sbjct: 21 CRSGRRLRG--ADAGKRGVSSNTRRTGLSLKSTRRGRLPRKP 60
>SB_1587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1497
Score = 29.5 bits (63), Expect = 4.0
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 279 EQKTTTDDNRSVNVWKNENVQYGKRPY-PGAKHYCNERRTERSAWSAPAP 425
EQK T+DD R ++ V +GK PY P AK E + P P
Sbjct: 255 EQKVTSDDQRDPDLGGGPAVFWGKPPYTPQAKRLEYENKAYYMPSMKPVP 304
>SB_51317| Best HMM Match : E-MAP-115 (HMM E-Value=0.58)
Length = 696
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 104 NINETAESKEAIDRSRLARGRREAEQRKRLD 196
+++E ++ RLAR +RE E RKRLD
Sbjct: 660 DLDEMMRDDNTMENERLARKKRENEWRKRLD 690
>SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +3
Query: 720 GXPGXTXPGLXGRGXAAXPXXXXRPXPXXPXRXXPGP 830
G PG PGL G G A P P P PGP
Sbjct: 189 GPPGPPGPGLVGSGSGAGAVIAGPPGPPGPP-GPPGP 224
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 28.7 bits (61), Expect = 7.0
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +3
Query: 351 RPYPGAKHYCNERRTERSAWSAPAPPGLRPDRRSLSVLRHRGSWIR*IRPDSSGQRAGRH 530
RP P K +++ S P+PP P R S +H+ S + DS + RH
Sbjct: 6 RPVPSPKKDESDKEEASSDEEPPSPPRPSPHRHKHS-RKHQHS----KQSDSDSEDEHRH 60
Query: 531 QQRT*CSHLRRSRD-ELQHXQLDSSEHRHL 617
+ H R SR L ++DSS +
Sbjct: 61 RSSRRHRHSRHSRSRSLSPKRVDSSSEEEI 90
>SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077)
Length = 599
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 92 DDVRNINETAESKEAIDRSRLARGRREAEQRKRLD 196
D ++ E E+KE + R R + EAEQR++ +
Sbjct: 115 DKLKREKEEREAKERAEEERRQRAKMEAEQRRQAE 149
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 28.3 bits (60), Expect = 9.3
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 122 ESKEAIDRSRLARGRREAEQRKRLDELR 205
E + ++R R+ R RRE E+R+RL+ R
Sbjct: 653 ERRRELERLRVLRERREREERERLERER 680
>SB_26266| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1038
Score = 28.3 bits (60), Expect = 9.3
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +3
Query: 282 QKTTTDDNRSVNVWKNENVQYGKRPYPGAKHYCNERRTERSAWSAPAPPGLRP 440
Q TT D S V E +G PYPG + + E+ + P P G P
Sbjct: 759 QYTTLSDIWSFGVLLWETFSFGNTPYPGLNNKETRDKVEQ-GYRMPPPMGTPP 810
>SB_23854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 28.3 bits (60), Expect = 9.3
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 137 WPLCFQRFR*YFSRHQPSCWM 75
+PLCFQR + YFS + + W+
Sbjct: 213 FPLCFQRIKKYFSLNMLAVWV 233
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,830,456
Number of Sequences: 59808
Number of extensions: 346908
Number of successful extensions: 1176
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2681370225
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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