Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_I23
         (924 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05965.1 68418.m00660 hypothetical protein                          30   2.5  
At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR...    29   5.8  

>At5g05965.1 68418.m00660 hypothetical protein
          Length = 131

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +3

Query: 300 DNRSVNVWKNENVQYGKRPYPGAKHYCNERRTERSAWSAPAPPGLRPDRRSLSVLRHRGS 479
           D RS +  K E+  Y    Y G + + +  RT+ S+ S    P    DR  ++    RG+
Sbjct: 65  DERSSHE-KRESSYYSSSIYYGGQQHYSPPRTDGSSTSPSHQPKETNDRTDITTSTSRGN 123

Query: 480 W 482
           W
Sbjct: 124 W 124


>At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1179

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 151  SRPVDGLFAFSGFVNISHVINHLAG*QSLTKH 56
            SR +D    F G+ + SH+  HL G   L +H
Sbjct: 1058 SRKIDSDHVFIGYTSSSHITKHLEGSLKLKEH 1089


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,422,823
Number of Sequences: 28952
Number of extensions: 226024
Number of successful extensions: 602
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2197951248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)