Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_I19
(863 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 50 2e-08
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 47 3e-07
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 47 3e-07
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 46 3e-07
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 46 6e-07
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 45 8e-07
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 44 1e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 44 1e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 44 1e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 44 1e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 44 1e-06
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 44 1e-06
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 43 3e-06
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 43 3e-06
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 43 3e-06
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 42 7e-06
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 42 7e-06
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 40 4e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 40 4e-05
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 37 2e-04
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 36 4e-04
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 34 0.002
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 25 0.90
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 22 6.3
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 8.4
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 50.4 bits (115), Expect = 2e-08
Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Frame = +2
Query: 95 IASAAECENATSLSLMIDSLLATYDRESPPDSK----VVVNLTLHLRHA---NIRESEST 253
I SA C + D LL+ Y+R P S VVV L L L N+++ T
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 254 VRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 391
+ L+ W D + W+ E+G T L V SE +W PD+VL N A
Sbjct: 69 TNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNA 113
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 504 WPNDMQTCTFKFGS 545
+P D QTC KFGS
Sbjct: 152 FPFDQQTCFMKFGS 165
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 46.8 bits (106), Expect = 3e-07
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +2
Query: 173 ESPPDSKVVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 349
ES P +V +TL + ++ E + A L++ W+D L WN E+ G ++
Sbjct: 76 ESEP-LEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITP 133
Query: 350 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 445
+LW+PD+++ N+A G Y V++NGS
Sbjct: 134 NKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 46.8 bits (106), Expect = 3e-07
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +2
Query: 173 ESPPDSKVVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 349
ES P +V +TL + ++ E + A L++ W+D L WN E+ G ++
Sbjct: 76 ESEP-LEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITP 133
Query: 350 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 445
+LW+PD+++ N+A G Y V++NGS
Sbjct: 134 NKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 46.4 bits (105), Expect = 3e-07
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +2
Query: 173 ESPPDSKVVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 349
ES P +V +TL + ++ E + A L++ W+D L WN E+ G ++
Sbjct: 8 ESEP-LEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITP 65
Query: 350 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 445
+LW+PD+++ N+A G Y V++NGS
Sbjct: 66 NKLWKPDILMYNSADEGFDGTYQTSVVVTHNGS 98
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 45.6 bits (103), Expect = 6e-07
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +2
Query: 113 CENATSLSLMIDS---LLATYDRESPPDSK--VVVNLTLHLRHANIRESESTVRILADLQ 277
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 278 MNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL 379
+ W L+W + E+ ++ V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 45.2 bits (102), Expect = 8e-07
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Frame = +2
Query: 86 TCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKVVVNLTLHLRH---ANIRES 244
+C +A + + D LL+ Y+R P ++ V + L L N++
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 245 ESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 391
T + ++ W D +L WN ++G T V SE +W PD+VL N A
Sbjct: 66 IMTTNVW--VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA 113
Score = 23.8 bits (49), Expect = 2.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 489 MQLDNWPNDMQTCTFKFGS 545
+ ++ +P D QTC KFGS
Sbjct: 147 IDVEYFPFDEQTCFMKFGS 165
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 44.4 bits (100), Expect = 1e-06
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +2
Query: 173 ESPPDSKVVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 349
ES P +V +TL + ++ E + A L++ W+D L WN E+ G ++
Sbjct: 8 ESEP-LEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITP 65
Query: 350 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 445
+LW+PD+++ N+A G Y V+++GS
Sbjct: 66 NKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 44.4 bits (100), Expect = 1e-06
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +2
Query: 173 ESPPDSKVVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 349
ES P +V +TL + ++ E + A L++ W+D L WN E+ G ++
Sbjct: 8 ESEP-LEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITP 65
Query: 350 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 445
+LW+PD+++ N+A G Y V+++GS
Sbjct: 66 NKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 44.4 bits (100), Expect = 1e-06
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +2
Query: 173 ESPPDSKVVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 349
ES P +V +TL + ++ E + A L++ W+D L WN E+ G ++
Sbjct: 8 ESEP-LEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITP 65
Query: 350 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 445
+LW+PD+++ N+A G Y V+++GS
Sbjct: 66 NKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 44.4 bits (100), Expect = 1e-06
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +2
Query: 173 ESPPDSKVVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 349
ES P +V +TL + ++ E + A L++ W+D L WN E+ G ++
Sbjct: 8 ESEP-LEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITP 65
Query: 350 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 445
+LW+PD+++ N+A G Y V+++GS
Sbjct: 66 NKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 44.4 bits (100), Expect = 1e-06
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Frame = +2
Query: 173 ESPPDSKVVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 349
ES P +V +TL + ++ E + A L++ W+D L WN E+ G ++
Sbjct: 8 ESEP-LEVKFGITLQ-QIIDVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITP 65
Query: 350 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 445
+LW+PD+++ N+A G Y V+++GS
Sbjct: 66 NKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 44.4 bits (100), Expect = 1e-06
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Frame = +2
Query: 113 CENATSLSLMIDSLLATYDRESPPDSKVVVNLTLHLR-------HANIRESESTVRILAD 271
C + D LL+ Y++ P V LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLW-- 76
Query: 272 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 391
++ +W D +L W+ E+G L V S+ +WRPD+VL N A
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA 117
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 489 MQLDNWPNDMQTCTFKFGS 545
+ ++ +P D QTC KFGS
Sbjct: 151 IDVEYFPFDEQTCVMKFGS 169
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 43.2 bits (97), Expect = 3e-06
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKVVVNLTLHLRHAN-IRESESTVRILADLQMNW 286
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 287 IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 385
+D+RL++ G+ + + R+W+PD N
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
Score = 27.5 bits (58), Expect = 0.17
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 459 SAWTLALQFSMQLDNWPNDMQTCTFKFGS 545
S T+ M L+N+P D Q C +FGS
Sbjct: 122 SRLTIKAGCPMNLENFPMDTQRCPLQFGS 150
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 43.2 bits (97), Expect = 3e-06
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Frame = +2
Query: 92 AIASAAECENATSLSLMIDSLLATYDRESPP---DSKVVV---NLTLHLRHANIRESEST 253
A+A++ + +++ LL TY+ P +S+ +V LTL ++ ++ E
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTL-MQIIDVDEKNQL 69
Query: 254 VRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRAR 427
+ L++ W D + WN ++G L + RLW+PDV++ N+A G Y
Sbjct: 70 LITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVV 129
Query: 428 VSNNGS 445
V NNG+
Sbjct: 130 VKNNGT 135
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 43.2 bits (97), Expect = 3e-06
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Frame = +2
Query: 140 MIDSLLATYDRESPPDSKVVVNLT--LHLRHANIRESESTVRILAD---LQMNWIDKRLS 304
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 305 WNAGEWGCSTWL-VSSERLWRPDVVLLNAA 391
WN E+G L V SE +W PD+VL N A
Sbjct: 97 WNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
Score = 22.6 bits (46), Expect = 4.8
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +3
Query: 489 MQLDNWPNDMQTCTFKFGS 545
+ ++ +P D Q+C KFGS
Sbjct: 160 INVEYFPFDEQSCIMKFGS 178
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.9 bits (94), Expect = 7e-06
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Frame = +2
Query: 140 MIDSLLATYDRESPP--DSKVVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 304
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 305 WNAGEWGCSTWL-VSSERLWRPDVVLLNAA 391
W E+G L V S+ +WRPD+VL N A
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
Score = 25.0 bits (52), Expect = 0.90
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 486 SMQLDNWPNDMQTCTFKFGS 545
S+ ++ +P D+QTC K GS
Sbjct: 154 SIDVEFFPYDVQTCVLKLGS 173
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.9 bits (94), Expect = 7e-06
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Frame = +2
Query: 140 MIDSLLATYDRESPP--DSKVVVNLTLHLRHANIRESESTVRILAD---LQMNWIDKRLS 304
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 305 WNAGEWGCSTWL-VSSERLWRPDVVLLNAA 391
W E+G L V S+ +WRPD+VL N A
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
Score = 24.6 bits (51), Expect = 1.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 489 MQLDNWPNDMQTCTFKFGS 545
+ ++ +P D QTC KFGS
Sbjct: 155 IDVEYFPFDEQTCVLKFGS 173
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 39.5 bits (88), Expect = 4e-05
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +2
Query: 191 KVVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWR 364
KV VN L ++ N+ E ++ L+ W D +L W+ ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 365 PDVVLLNAAATTAGDYALR 421
PD+VL N A G+Y +R
Sbjct: 111 PDIVLFNNA---DGNYEVR 126
Score = 24.2 bits (50), Expect = 1.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 504 WPNDMQTCTFKFGS 545
+P D QTC KFGS
Sbjct: 158 FPFDQQTCIMKFGS 171
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 39.5 bits (88), Expect = 4e-05
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 194 VVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 370
VV L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 371 VVLLNAA 391
+L N A
Sbjct: 92 TILYNNA 98
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 37.1 bits (82), Expect = 2e-04
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKVVVNLTLH-LRHANIRESESTVRILADLQMNW 286
N ++S ++DS +YD+ P+ V V +T++ L +++ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 287 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNA------AATTAGDYALRARVSNN 439
D RL++ G T V SE +W PD +N ATT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF---IRIHHS 123
Query: 440 GSVSXIKRLDISTPIFYAVRQLAQRHADLHVQVRFXXCT---IXTKWISG 580
GS++ RL I+ ++ H+++ T I KW G
Sbjct: 124 GSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEG 173
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 36.3 bits (80), Expect = 4e-04
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKVVVNLTLH-LRHANIRESESTVRILADLQMNW 286
N ++S ++DS +YD+ P+ V V +T++ L +++ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 287 IDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNA------AATTAGDYALRARVSNN 439
D RL++ G T V SE +W PD +N ATT+ ++ R+ ++
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEF---IRIHHS 123
Query: 440 GSVSXIKRLDISTPIFYAVRQLAQRHADLHVQVRFXXCT---IXTKWISG 580
GS++ RL I+ ++ H+++ T I KW +G
Sbjct: 124 GSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNAG 173
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 33.9 bits (74), Expect = 0.002
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 8/123 (6%)
Frame = +2
Query: 128 SLSLMIDSLLATYDRESPPD----SKVVVNLTLHLRHAN-IRESESTVRILADLQMNWID 292
++++++++LL Y+ P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 293 KRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYAL---RARVSNNGSVSXIKR 463
RLS+ S + ER+WRPD N + + R+S +G + R
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMR 155
Query: 464 LDI 472
L I
Sbjct: 156 LTI 158
Score = 24.2 bits (50), Expect = 1.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 468 TLALQFSMQLDNWPNDMQTCTFKFGS 545
T+ + M+L N+P D Q+C GS
Sbjct: 157 TIKAKCPMELRNFPMDRQSCPLILGS 182
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 25.0 bits (52), Expect = 0.90
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 459 SAWTLALQFSMQLDNWPNDMQTCTFKFGS 545
S TL L +M+ +++P+D Q C+ S
Sbjct: 124 SKLTLVLSCAMKFESYPHDTQICSMMIES 152
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 22.2 bits (45), Expect = 6.3
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = +3
Query: 501 NWPNDMQTCTFKFGS 545
+WP D C FGS
Sbjct: 175 SWPYDTHRCRINFGS 189
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 8.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 337 PSAAAPFPCVPTQS 296
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,142
Number of Sequences: 438
Number of extensions: 3981
Number of successful extensions: 65
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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