Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_I18
(879 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 378 e-103
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 343 4e-93
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 263 4e-69
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 255 1e-66
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 221 2e-56
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 154 3e-36
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 115 2e-24
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 106 8e-22
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 105 2e-21
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 103 5e-21
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 101 2e-20
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 99 2e-19
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 98 3e-19
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 96 1e-18
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 95 2e-18
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 93 8e-18
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 93 8e-18
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 91 3e-17
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 90 6e-17
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 83 9e-15
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 80 6e-14
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 72 2e-11
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 69 2e-10
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 69 2e-10
UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN full-le... 40 0.083
UniRef50_A7TI46 Cluster: Putative uncharacterized protein; n=1; ... 37 0.59
UniRef50_Q69NC6 Cluster: Putative uncharacterized protein OJ1742... 36 1.8
UniRef50_Q1EYM9 Cluster: Purine catabolism PurC-like; n=2; Clost... 35 3.1
UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1; ... 34 4.1
UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to ENSANGP000... 34 5.5
UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1; ... 34 5.5
UniRef50_Q6U7W5 Cluster: Putative uncharacterized protein hyp46;... 34 5.5
UniRef50_Q9MAP1 Cluster: Putative F-box protein At1g33020; n=4; ... 33 7.2
UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsi... 33 9.6
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 378 bits (930), Expect = e-103
Identities = 169/254 (66%), Positives = 200/254 (78%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
MSHRKFSAPRHGS+GF P+KRS RHRGKVK+FPKDDPSKPVHLTAF+GYKAGMTH+VRE
Sbjct: 1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60
Query: 214 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 393
DRPGSK+NKKE+VEAVTI+ETPPMV VG+VGY+ETP GLR TV+AEH+S++C+RRFYK
Sbjct: 61 DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120
Query: 394 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 573
NW+ WQDE G+K +EKDF M +YC V+RVIAHTQM+LL RQKKAH+
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180
Query: 574 MEIQLNGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKL 753
MEIQ+NGGT+ +K+ WARE LE+ +PV+ VF QDEMID I SRWHTKKL
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240
Query: 754 PRKXTRVLXKLPAL 795
PRK R L K+ +
Sbjct: 241 PRKTHRGLRKVACI 254
Score = 33.9 bits (74), Expect = 5.5
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 765 HKGLXKVACIGTWXPSR 815
H+GL KVACIG W P+R
Sbjct: 245 HRGLRKVACIGAWHPAR 261
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 343 bits (843), Expect = 4e-93
Identities = 156/254 (61%), Positives = 189/254 (74%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
MSHRKFSAPRHG +GF P KRS RHRGKVK +P+DDPS+PVHLTAF+GYKAGMTH +RE
Sbjct: 1 MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
Query: 214 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 393
RPG KI+K+E VEAVTI+ETPP+V VGVVGY+ TP GLR+ T++AEH+S++CRRRFYK
Sbjct: 61 HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
Query: 394 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 573
+W+ W+D G+K ++KDF M +YC V+RVI HTQMKLL RQKKAHI
Sbjct: 121 DWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI 180
Query: 574 MEIQLNGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKL 753
MEIQLNGGT+ +KV WA+ LEK +PV SVF Q E+ID I SRWHTKKL
Sbjct: 181 MEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKL 240
Query: 754 PRKXTRVLXKLPAL 795
PRK + L K+ +
Sbjct: 241 PRKTHKGLRKVACI 254
Score = 35.1 bits (77), Expect = 2.4
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +3
Query: 765 HKGLXKVACIGTWXPSR 815
HKGL KVACIG W P+R
Sbjct: 245 HKGLRKVACIGAWHPAR 261
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 263 bits (645), Expect = 4e-69
Identities = 115/168 (68%), Positives = 135/168 (80%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 214 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 393
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 394 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 537
NW WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
Score = 36.3 bits (80), Expect = 1.0
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +1
Query: 661 VFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXTRVLXKLPAL 795
V +MID I SRWHTKKLPRK + L K+ +
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACI 206
Score = 36.3 bits (80), Expect = 1.0
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +3
Query: 765 HKGLXKVACIGTWXPSR 815
HKGL KVACIG W PSR
Sbjct: 197 HKGLRKVACIGAWHPSR 213
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 255 bits (624), Expect = 1e-66
Identities = 123/259 (47%), Positives = 164/259 (63%), Gaps = 3/259 (1%)
Frame = +1
Query: 28 SSMSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVR 207
++MSH KF PRHG +GF P+KRSR+ RG+ ++FPKDDPS+ HLT+F+ YKAGMTH+VR
Sbjct: 50 TNMSHCKFEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVR 109
Query: 208 EPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF 387
+ DRPGSK+NKKE+VE VTI+E PPMV VG+VGY +TP G + + TVWA H S + RRRF
Sbjct: 110 DVDRPGSKVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRF 169
Query: 388 YKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQ--- 558
YKNW + GR + + K + ++RV+AHTQ++ L+ +
Sbjct: 170 YKNWKQSAQLAFTKRKQFARTTEGRLAEARTLKAFEKKADIIRVVAHTQLRKLRNNRVGV 229
Query: 559 KKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRW 738
KKAH+ EIQ+NGGTI K++ A+ LEK + +DSVF Q E D RW
Sbjct: 230 KKAHVSEIQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRW 289
Query: 739 HTKKLPRKXTRVLXKLPAL 795
LPRK R L K+ +
Sbjct: 290 GVACLPRKTHRGLRKVACI 308
Score = 35.1 bits (77), Expect = 2.4
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +3
Query: 765 HKGLXKVACIGTWXPSR 815
H+GL KVACIG W PSR
Sbjct: 299 HRGLRKVACIGAWHPSR 315
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 221 bits (539), Expect = 2e-56
Identities = 102/187 (54%), Positives = 133/187 (71%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
MS+R FSAPRHGS+GF P+K S H GKVK FPKDD SKPVHLT F+ +KA MTH++++
Sbjct: 1 MSYRNFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKV 60
Query: 214 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 393
DRP SK+NKKE+VE V I+ETPPMV +G+VGYIE P GL V+AEH+S ++ FYK
Sbjct: 61 DRPESKMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHISGKSKKCFYK 120
Query: 394 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 573
NW+ ++G++ +E +FK M +YC V+ ++AHTQM LL QKKAH+
Sbjct: 121 NWHSEKKASTKYF------DMGKRQLEMEFKSMKKYCQVICIVAHTQMCLLSLHQKKAHL 174
Query: 574 MEIQLNG 594
MEIQ+ G
Sbjct: 175 MEIQVMG 181
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 154 bits (373), Expect = 3e-36
Identities = 92/224 (41%), Positives = 126/224 (56%)
Frame = +1
Query: 91 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTII 270
K S +H+GKV FPKD SKPV+L+AF+GY+AGMTHVVR+ DRPGSK++KKE+VE VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 271 ETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQD 450
ET P + VG VG ET GL+ +V+A+H+S +C+R K Y W+
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECKRTGIK--YKTNTSPNTKARSSWR- 117
Query: 451 ELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWARE 630
G ++ TQM LL QKKAH+ E Q+N G + K+ WA +
Sbjct: 118 --GTSAL-------------------TQMCLLPLCQKKAHLTESQVNRGPVA-KLDWAHK 155
Query: 631 HLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRK 762
LE+ +PV+ +F + I S W+TKK+P K
Sbjct: 156 KLEQQVPVNHIFRVRRLF-VIGTTKGKHYKGISSHWYTKKVPWK 198
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 115 bits (276), Expect = 2e-24
Identities = 88/246 (35%), Positives = 125/246 (50%), Gaps = 4/246 (1%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
M RK APR GS+GF P+KR+ R +VK +P+ D KPV L AF+GY+AGMTHV
Sbjct: 1 MGARKKRAPRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVD 59
Query: 214 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPH-GLRALLTVWAEHMSE-DCRRRF 387
DRPG + KEI VTI+ETPPM V Y P+ G +L WA+ E + +RR
Sbjct: 60 DRPGRPTSGKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRRI 119
Query: 388 YKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLL-KQRQKK 564
+ + KS+E+ K VR+IA +Q KL +KK
Sbjct: 120 -------------STLGSFDTDKMLKSLEERLDK----AEDVRLIAASQPKLAGGLSKKK 162
Query: 565 AHIMEIQLNGGTIEDKV-KWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWH 741
++EI++ G + K+ +A++ L I V+ VF + +++D I RW
Sbjct: 163 PDLLEIKVGGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKRWG 222
Query: 742 TKKLPR 759
K+LPR
Sbjct: 223 VKELPR 228
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 106 bits (254), Expect = 8e-22
Identities = 72/232 (31%), Positives = 118/232 (50%), Gaps = 2/232 (0%)
Frame = +1
Query: 58 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
PR GS+ F P+KR++R +++++P++D V L AF YKAGM+H + D P S
Sbjct: 8 PRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKSPNA 64
Query: 238 KKEIVEAVTIIETPPM-VC-VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXX 411
+E+ +TI+E PP+ VC + V G E + L L VWA+++ ++ R+
Sbjct: 65 GQEVFTPITILEAPPINVCAIRVYGRNERNY-LTTLTEVWADNLDKELERKI-------- 115
Query: 412 XXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLN 591
+ RK++E D + + VRV+ HT KL +KK I+EI++
Sbjct: 116 ---------KLPKKEDRKTVE-DLEALKDKIEDVRVLVHTNPKLTCLPKKKPEILEIRIG 165
Query: 592 GGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTK 747
G IE+++ +A+E L K + + VF + E++D I RW K
Sbjct: 166 GKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGVK 217
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 105 bits (251), Expect = 2e-21
Identities = 72/245 (29%), Positives = 116/245 (47%), Gaps = 7/245 (2%)
Frame = +1
Query: 58 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P+ GSMGF P+KR+ R G++ ++P+ + S+ + + F G+KAGMTHV+ P S
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSA 65
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMS--EDCRRRFYKNWYXXX 411
+EI +AVT++E PPM + V GY TP+G++ +WA+ S + RF
Sbjct: 66 GQEIRKAVTVVEVPPMKVLAVRGYHMTPYGMQTAGEIWADSSSGPDGLMPRFANQTRGDR 125
Query: 412 XXXXXXXXXXWQDELGRK--SIEKDFKKMIRYCSV--VRVIAHTQMKLLKQRQKKAH-IM 576
+ + + D + ++ VR+I TQ L+K K IM
Sbjct: 126 DIEEGRKPAKRAGRIPVREGGMNGDALAALTDSNLCEVRLIVATQPALVKSVPSKTPVIM 185
Query: 577 EIQLNGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLP 756
E+ L GG K++WA E L I +D V+ + +D + R+ K L
Sbjct: 186 EVGLVGGDTGAKLEWAHERLGGEIGIDDVYEAGKELDVVGITKGKGWQGVIKRFGVKLLS 245
Query: 757 RKXTR 771
K ++
Sbjct: 246 HKNSK 250
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 103 bits (248), Expect = 5e-21
Identities = 82/283 (28%), Positives = 131/283 (46%), Gaps = 41/283 (14%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFP------------------KDDPSKPVH 159
M HRK+SAPRHGS+G P+KR+ + +++++P K KPV
Sbjct: 1 MGHRKYSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV- 59
Query: 160 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGY-IETPHGLRA 336
L ++ YKAGM+H + DRP + + KEI VT+++ PP++ +G+ GY I HGL +
Sbjct: 60 LLGYVAYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLS 119
Query: 337 LLTVW---AEHMSEDCRRRFYKNWYXXXXXXXXXXXXXW--------------QDELGRK 465
VW E + E + + N + E G K
Sbjct: 120 FGEVWRSPVEALKELYEKIYSDNPFINLGAKDIVRKYLKGLRKVNPGLVKPEPHSEYGFK 179
Query: 466 SIEKDFKKMIRYCSV-----VRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWARE 630
+E ++K+ + +RVIA T L +KK I+EI++ GGT+ +++ +A +
Sbjct: 180 FLENNWKEKLERLKAAELADIRVIASTIPVLSGIGKKKPEIIEIKIGGGTLSERIDYAEK 239
Query: 631 HLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 759
L + VD VF + + ID I R+ K+LPR
Sbjct: 240 LLGNYVTVDQVFREGQFIDIIGVTKGKGFQGVIKRFGVKELPR 282
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 101 bits (242), Expect = 2e-20
Identities = 74/239 (30%), Positives = 109/239 (45%), Gaps = 1/239 (0%)
Frame = +1
Query: 58 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P+ GSMGF P+KR+ R G+VK++P+ D S V + F G+KAGMTHV+ PGS
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSA 65
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 417
E+ +AVT++E PPM + V GY TP+G + WA S D +
Sbjct: 66 GAEVRKAVTVVEVPPMRVLAVRGYKMTPYGKQTAGEAWA---SADKLSDVIPSLPRRIPE 122
Query: 418 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM-KLLKQRQKKAHIMEIQLNG 594
D+L + + VR+I +Q K+ K IME+ L G
Sbjct: 123 RKEHDANAHLDKLRESDLAE-----------VRLIVSSQPDKVSAVGSKSPEIMEMGLTG 171
Query: 595 GTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXTR 771
G + ++ WA E L + + ++ VF ID I R+ K L K ++
Sbjct: 172 GDLGAQLDWAAEKLGEELGIEDVFESGSDIDVIGVTKGYGNQGVVRRFGVKLLSHKNSK 230
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 98.7 bits (235), Expect = 2e-19
Identities = 75/260 (28%), Positives = 119/260 (45%), Gaps = 10/260 (3%)
Frame = +1
Query: 46 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 225
K PR GS+GF P+KR++ +++++PK+ V + F GYKAGMTH++ D PG
Sbjct: 3 KVHRPRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
Query: 226 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSED---CRRRFYK- 393
N KEI VTIIETPP+ G+ Y GL V D + R K
Sbjct: 60 -LTNGKEIFMPVTIIETPPLRVFGIRAYRMGYLGLETATEVIVPDFPLDNYPAKERKGKP 118
Query: 394 ----NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSV--VRVIAHTQMKLLKQR 555
+Y + E+ + + + + MI+ + VR I TQ ++K +
Sbjct: 119 KPKMTFYKLLERRIATLPKNYTQEMFEQKLGQ-LEDMIKEGEIVDVRAIVATQPWVIKLK 177
Query: 556 QKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSR 735
KK +ME + G ++E+K + +E L K + V V + E++D I R
Sbjct: 178 -KKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKR 236
Query: 736 WHTKKLPRKXTRVLXKLPAL 795
W K K ++ K+ ++
Sbjct: 237 WGIKLRAHKDSKGRRKVGSI 256
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 97.9 bits (233), Expect = 3e-19
Identities = 69/247 (27%), Positives = 116/247 (46%), Gaps = 5/247 (2%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
M HRK ++PR GS G P+KRS + +P+ + P L F+GYK GMTHV
Sbjct: 1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMID 59
Query: 214 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLT-VWAEHMSE--DCRRR 384
D P S N KEI VT++E PP++ + + Y G ++T W+ + D RR
Sbjct: 60 DWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRR 119
Query: 385 FYK-NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQK 561
+ + + + +L I+ + +++ + R++ TQ + + K
Sbjct: 120 IHSISSFLKDDESKKKFDERFNTKL--DLIKSNLDRIVYF----RLLVSTQPRKIPSLGK 173
Query: 562 KA-HIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRW 738
KA ++EIQ+ GG + ++ +A L K I + VF + ++ID + R+
Sbjct: 174 KAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRY 233
Query: 739 HTKKLPR 759
+LPR
Sbjct: 234 SVVELPR 240
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 95.9 bits (228), Expect = 1e-18
Identities = 68/238 (28%), Positives = 104/238 (43%)
Frame = +1
Query: 58 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
PR GS+ F P+KR+ R +++++P ++ V + F GYKAGMTH + D P S
Sbjct: 12 PRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTE 68
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 417
+EI VTI++ PPM + Y TP G R + WAE E R +
Sbjct: 69 GEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAEIPEELEMDRVF-----TVPK 123
Query: 418 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 597
+EL + I ++ +RVI TQ K +KK +ME ++ G
Sbjct: 124 DGEAGDLDKIEELVDEGIVEE----------IRVIVATQPKKAGVPKKKPDVMEYRIGGK 173
Query: 598 TIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXTR 771
+ ++ ++A E L + I VF + E++D RW RK R
Sbjct: 174 DVRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQR 231
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 95.1 bits (226), Expect = 2e-18
Identities = 69/234 (29%), Positives = 108/234 (46%)
Frame = +1
Query: 58 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
PR GS +YP+KR+R +V+ +P++ F GYK GM HV+ S
Sbjct: 7 PRRGSRAYYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFY 62
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 417
+E A T+IE PP+ V V Y +TP+G + L VWA+ + +D R F
Sbjct: 63 GQERFYAATVIEVPPLKVVAVRVYEKTPYGKKTLCEVWAKDLPKDLERVF---------- 112
Query: 418 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 597
+D+ + K +++ S VRV+A TQ +L +KK ++EI + GG
Sbjct: 113 ------PLPKDQSYHEEQLKKLEEVKSRVSEVRVLAATQPRLSGLGKKKPELIEIAV-GG 165
Query: 598 TIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 759
E + A E L K + + VF + + ID I R+ +++PR
Sbjct: 166 PPEKALSLALEKLGKDLTISDVFKEGDYIDVIAVTKGKGFQGSVKRFGVEEMPR 219
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 93.1 bits (221), Expect = 8e-18
Identities = 53/138 (38%), Positives = 72/138 (52%)
Frame = -1
Query: 750 FLCVPTRSDTFVSXALGDTNAVNHFILXKHRIDRDRFLQMFSGPFHFVLDGTTVKLDFHN 571
FL P+ DT + GD+N +NHFIL ++R++R+ F ++F GP +FV DGTTV LDF
Sbjct: 38 FLGTPSVGDTLETVTFGDSNDINHFILFENRVNRNFFFKVFFGPVNFVGDGTTVDLDFSQ 97
Query: 570 VXXXXXXXXXXXXSVGNDSYNTTVADHLLEIFFY*FASKLILPFLTGFSESLLLAFVPVF 391
V V DS N +V + F F + F F E LL F+PV
Sbjct: 98 VSFLLRQWSLLDLGVSQDSDNRSVLLDSGQFSFNLFGVSGV--FTRVFGEGFLLGFIPVL 155
Query: 390 VEATSTVFRHMLRPDSQQ 337
VE++S F + PDS Q
Sbjct: 156 VESSSDFFTQVFSPDSGQ 173
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 93.1 bits (221), Expect = 8e-18
Identities = 68/255 (26%), Positives = 116/255 (45%), Gaps = 1/255 (0%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
M RK +PR GS+ + P+ R++ +++A+PK D +P + A G+KAG +V
Sbjct: 1 MGARKRHSPRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSID 59
Query: 214 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF-Y 390
DR K++V T++ TPP++ +G+ GY + GL A V+AE + + +
Sbjct: 60 DREKVPNAGKQLVSLGTVLVTPPVLILGIRGYSKDHDGLHAEFDVYAEDIPKSIAKEISL 119
Query: 391 KNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAH 570
KN + E + EK KK+ ++V I+ + L QKK +
Sbjct: 120 KN----------------KQENALDNAEKSLKKIKEIFAIV-AISPSAAGL---EQKKPY 159
Query: 571 IMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKK 750
I E ++GG I + +E L K I +D +F +D RW+ KK
Sbjct: 160 IFEASVSGGDIPKQFAHVKELLGKEIKIDQIFETGASVDVAAITKGKGWQGVLKRWNVKK 219
Query: 751 LPRKXTRVLXKLPAL 795
K + + ++ +L
Sbjct: 220 KQHKSRKTVREVGSL 234
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 91.1 bits (216), Expect = 3e-17
Identities = 75/241 (31%), Positives = 103/241 (42%), Gaps = 3/241 (1%)
Frame = +1
Query: 58 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
PR GSMGF P+KR+ + ++P DD V L F GYKAGMTHVV D+ +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTE 64
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 417
E VT++ETPPM V Y +TP+G + L VWA+ E R
Sbjct: 65 GMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL---------- 114
Query: 418 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHT-QMKLLKQRQKKAHIMEIQLNG 594
DEL IE + I + +RVI HT +K +ME ++ G
Sbjct: 115 -SVPDEGGDTDEL----IEALDTEEI---ADIRVITHTVPGDTAGVPKKNPDVMETRVGG 166
Query: 595 GTIEDKVKWAREHLEK--PIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXT 768
GT+ D++++A + +E VF E D RW +K K
Sbjct: 167 GTLADRLEFAADLIEDGGVHAFGDVFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHA 226
Query: 769 R 771
R
Sbjct: 227 R 227
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 90.2 bits (214), Expect = 6e-17
Identities = 72/253 (28%), Positives = 119/253 (47%), Gaps = 11/253 (4%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
M RK APR GS G P+KR+ +V+++P D KP+ AF+GYK GMTHV+
Sbjct: 1 MGARKKEAPRRGSAGLRPRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMID 57
Query: 214 DRPGSKINKKEIVEAVTIIETPPMVCVG--VVGYIETPHGLRALLTVW-------AEHMS 366
DR +EI VT+IETPPMV +G V GY + G AL VW E +
Sbjct: 58 DREHVDTAGQEIFVPVTVIETPPMVVLGARVYGY-DPNRGRYALTEVWRNPSDTIKEKLG 116
Query: 367 EDCRRRFY--KNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMK 540
E+ R++ + ++ ++ K ++ D +K++ ++ I
Sbjct: 117 EEVLRKYLLGMSKRLPHMVEELGPGKGFEFKVPEKELDVDPEKVVGVGLIMSSIPFLAGG 176
Query: 541 LLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXX 720
+ K K I+E+++ G +E +++A+ L + + V+ V + +D I
Sbjct: 177 VSK---KAPDILEVKVGGSPVE-ALEYAKGKLGQLVDVEEVIEAGKFVDVIGVTKGKGFQ 232
Query: 721 XXXSRWHTKKLPR 759
R+ K+LP+
Sbjct: 233 GVIKRFGVKELPK 245
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 83.0 bits (196), Expect = 9e-15
Identities = 66/253 (26%), Positives = 110/253 (43%), Gaps = 3/253 (1%)
Frame = +1
Query: 55 APRHGSMGFYPKKRSRRHRGKVKAFPK--DDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
APR GS+G+ P+ R+R + K++ + + D P + F+G+KAGM+H+V DRP S
Sbjct: 6 APRRGSLGYSPRVRARSQKPKMRNWAELGDQPK----IQGFVGFKAGMSHIVMVDDRPHS 61
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSE-DCRRRFYKNWYX 405
EI VTI+E P M G+ Y ++P+G + + W + + KN Y
Sbjct: 62 ATEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAWISDLKMLESLTHLPKNGYK 121
Query: 406 XXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQ 585
DE K E K ++ V+ V +++ + +K +ME +
Sbjct: 122 -------------TDEQLAKIAELVKKGVVADLRVMTVTLTSEVSGIP--KKVPELMENR 166
Query: 586 LNGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKX 765
+ GG + + ++A+ + K + + VF E++D RW RK
Sbjct: 167 IAGGDMAKRFEFAKSLMGKAVGIKDVFAPGELVDVSAITKGYGTQGPVVRWGIATQKRKH 226
Query: 766 TRVLXKLPALELG 804
R K LG
Sbjct: 227 ARTGKKRHVGNLG 239
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 80.2 bits (189), Expect = 6e-14
Identities = 59/247 (23%), Positives = 112/247 (45%)
Frame = +1
Query: 55 APRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 234
APR GSMGF+P+KR+ R ++K +PK + KP+ AF YK GMTH + I
Sbjct: 8 APRRGSMGFWPRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNI 57
Query: 235 NKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXX 414
N + + VT++E P ++ +G Y + L+ + +++ + + R+ K
Sbjct: 58 NGERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK------- 110
Query: 415 XXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNG 594
++++ ++ F V++I TQ +K + K I +I + G
Sbjct: 111 ----LKNYNFEEK------KEQFLSKADNADEVKIIVSTQPWKIKLK-KTPEIFDIPIGG 159
Query: 595 GTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXTRV 774
+ K+++A L K + ++ VF + + +D I R+H + K +
Sbjct: 160 SDVNKKLEYALSLLGKELSINDVFKEGQYVDVIAVTKGKGFQGVIKRFHVHRRQHKSEKG 219
Query: 775 LXKLPAL 795
+ K+ A+
Sbjct: 220 VRKVGAI 226
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 71.7 bits (168), Expect = 2e-11
Identities = 37/113 (32%), Positives = 62/113 (54%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
M HRKFS PR GS+ + P+ R+R +++ +P+ +P L A G+KAG +V
Sbjct: 1 MGHRKFSQPRRGSLAYSPRGRARSMEARIRGWPERQ-GEP-RLLAHAGFKAGCIQIVSID 58
Query: 214 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSED 372
DR + K++V T++ TPP+ +G+ GY + +G V+AE + +
Sbjct: 59 DREHTPNAGKQLVSLGTVLVTPPLHVLGMRGYSKGHYGRHVKFDVFAEDLPRE 111
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 68.9 bits (161), Expect = 2e-10
Identities = 58/235 (24%), Positives = 102/235 (43%), Gaps = 1/235 (0%)
Frame = +1
Query: 61 RHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINK 240
R GSM +YP+ R++ +++++P + S PV + F G+K GMTHV R S
Sbjct: 8 RRGSMAYYPRVRAKSIEPRIRSWP--EISGPVKVQGFAGFKVGMTHVEMVDYRKTSVTAG 65
Query: 241 KEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXX 420
+ I VT+IE PP+ +G+ Y E G + V E +++ + +K
Sbjct: 66 QPIFVPVTVIEVPPLDVIGIRLYDEDEEG---NMVVVYEKWTQNLDKELFKK-------- 114
Query: 421 XXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG- 597
E+ K + + Y V ++A + KK I E+++ GG
Sbjct: 115 -----ITTFKEVKEKPVPE------TYADVRLIVATRNKDVPGIPSKKPEIFELRIGGGN 163
Query: 598 TIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRK 762
+++++ ++A HL K I + + +D + R+ K LPRK
Sbjct: 164 SVKERFEYATAHLGKTIRFEDFSKPGKFVDVLSVTKGKGFTGHVQRFGVKLLPRK 218
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 68.5 bits (160), Expect = 2e-10
Identities = 39/105 (37%), Positives = 56/105 (53%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
MSHRKF PR GS+GF PKKRS R K + + +++ F K THV+R
Sbjct: 1 MSHRKFEHPRIGSLGFLPKKRSNRIFPSSKTYKEIIHIYYPYISQFASLKVASTHVLRIC 60
Query: 214 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTV 348
+ SK + I++ VT++E PP+ VG+ Y + L L T+
Sbjct: 61 NIVSSKSYQNPIIDEVTLMECPPIEVVGLCAYALSSGHLVKLKTI 105
Score = 44.4 bits (100), Expect = 0.004
Identities = 27/102 (26%), Positives = 52/102 (50%)
Frame = +1
Query: 490 MIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFX 669
+I++ + R + T +K +KK + E + GG+ + K+++ + K I ++S+F
Sbjct: 136 IIKHSVIFRFLCCTFIKTNSMIKKK-YFFETDIIGGSPKMKLEFWLKLNNKKIYINSIFH 194
Query: 670 QDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKXTRVLXKLPAL 795
++++ID I SRW +LPRK R L K+ +
Sbjct: 195 ENDIIDAIGITKGHGTKGVVSRWGITRLPRKTHRGLRKVACI 236
Score = 34.7 bits (76), Expect = 3.1
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +3
Query: 765 HKGLXKVACIGTWXPSR 815
H+GL KVACIG W PSR
Sbjct: 227 HRGLRKVACIGPWTPSR 243
>UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3; n=1;
Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3 - Mus
musculus (Mouse)
Length = 109
Score = 39.9 bits (89), Expect = 0.083
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +1
Query: 106 HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 243
HR + K FPK+D K HL F+ +A MT+ V E +R G K +K
Sbjct: 8 HRIQAKDFPKEDLPKSAHLIVFLVSRAVMTYFVWEINRSGPKWTRK 53
>UniRef50_A7TI46 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 253
Score = 37.1 bits (82), Expect = 0.59
Identities = 21/77 (27%), Positives = 41/77 (53%)
Frame = +1
Query: 454 LGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREH 633
L RKSIE + + IR+ +V I +K++++++ + E +L GT + + A
Sbjct: 135 LARKSIEYNTYQSIRFKTVFPDIVEENIKVIEEKKNNQNEKEDELLAGTKKQEDAIANAA 194
Query: 634 LEKPIPVDSVFXQDEMI 684
EKPI ++ + ++ I
Sbjct: 195 KEKPISLEEILDPEDRI 211
>UniRef50_Q69NC6 Cluster: Putative uncharacterized protein
OJ1742_G01.32; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1742_G01.32 - Oryza sativa subsp. japonica (Rice)
Length = 100
Score = 35.5 bits (78), Expect = 1.8
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 240 ERDRGGCHHHRDSSDGLCRCCWIH*DPSWTTRSVD 344
E DRG CHH+ S GLCR C + P+ T V+
Sbjct: 36 EGDRGCCHHYLTGSPGLCRRCPLRAHPAATGFEVE 70
>UniRef50_Q1EYM9 Cluster: Purine catabolism PurC-like; n=2;
Clostridiaceae|Rep: Purine catabolism PurC-like -
Clostridium oremlandii OhILAs
Length = 551
Score = 34.7 bits (76), Expect = 3.1
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +1
Query: 505 SVVRVIAHTQMKLLKQRQKKAH--IMEIQLNGGTIEDKVKWAREHLEKPI 648
SV + I + Q LL QR +K H +M + L GG+IED + RE+L P+
Sbjct: 126 SVFKEIFNKQTSLL-QRLEKVHEQLMNVVLEGGSIEDIGRVTRENLRNPL 174
>UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1205
Score = 34.3 bits (75), Expect = 4.1
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +1
Query: 91 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH--VVREPDRPGSKINKKEIVEAVT 264
K +++ K+K +++ K + AFI A ++ +R DR ++N I + T
Sbjct: 19 KANKKKAAKLKKLEQNEALKGRNPKAFISQAAYASNRLTIRNLDREAKRVNLPVIDRSGT 78
Query: 265 IIETPPMVCVGVVG 306
+ETPP V + VVG
Sbjct: 79 AVETPPYV-IAVVG 91
>UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to
ENSANGP00000006197; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000006197 - Nasonia
vitripennis
Length = 1307
Score = 33.9 bits (74), Expect = 5.5
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -3
Query: 418 PSSCICTSFCRSDVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSEESR 269
PS+ I T SD++ L P QS+ V+ +GS+ HR K SEE R
Sbjct: 840 PSASINTKKYESDIEILSN---PSQSSIEVLDDGSKSTTPHRKKSSEERR 886
>UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1;
Sulfurovum sp. NBC37-1|Rep: Putative uncharacterized
protein - Sulfurovum sp. (strain NBC37-1)
Length = 135
Score = 33.9 bits (74), Expect = 5.5
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 442 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 597
WQD K I+KD+ + YC +R+ H +L ++ K HI+ + G
Sbjct: 29 WQDNSDAKYIQKDWNGAMLYCRQLRLAGHNDWRLPSIKELK-HILSTEPRDG 79
>UniRef50_Q6U7W5 Cluster: Putative uncharacterized protein hyp46;
n=1; Moniliophthora perniciosa|Rep: Putative
uncharacterized protein hyp46 - Crinipellis perniciosa
(Witches'-broom disease fungus) (Marasmiusperniciosus)
Length = 148
Score = 33.9 bits (74), Expect = 5.5
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = +1
Query: 745 KKLPRKXTRVLXKLPALELGILLGGRPCXSCWSKRFHXR 861
KKL +K T L LP L L LL PC + KRF R
Sbjct: 99 KKLKKKITNKLYFLPLLRLPFLLPASPCSAAEGKRFASR 137
>UniRef50_Q9MAP1 Cluster: Putative F-box protein At1g33020; n=4;
Arabidopsis thaliana|Rep: Putative F-box protein
At1g33020 - Arabidopsis thaliana (Mouse-ear cress)
Length = 518
Score = 33.5 bits (73), Expect = 7.2
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -2
Query: 659 ESTGIGFSRCSLAHFTLSSMVPPLSWISIM*AFFCRCFNSFI 534
E TG+ S+C +H +S + PL W+SI+ F + SF+
Sbjct: 474 EFTGVKTSKCDTSHLQVSCELSPLCWLSIL-LFLVMVYMSFM 514
>UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsis
invicta virus 1|Rep: Structural polyprotein - Solenopsis
invicta virus 1
Length = 1137
Score = 33.1 bits (72), Expect = 9.6
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 285 HRRSLDDGDSLHDLFLVDF*TGTVRFSNHVGHTGLITDKSSQMNRFARVV 136
HRR + ++ D+ LVD T++ VG GLITD +S ++ A V
Sbjct: 475 HRRDVTAARAIADMILVDERDATMQVQAEVGGQGLITDIASTVSAVAGAV 524
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 876,133,341
Number of Sequences: 1657284
Number of extensions: 17743066
Number of successful extensions: 41073
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 39497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41036
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 78702453312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -