Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_I18
(879 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 312 2e-85
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 303 9e-83
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 303 9e-83
At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein simil... 31 1.0
At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family prote... 31 1.3
At1g29195.1 68414.m03572 expressed protein 30 1.8
At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein ... 28 7.2
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 312 bits (766), Expect = 2e-85
Identities = 144/255 (56%), Positives = 184/255 (72%), Gaps = 1/255 (0%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
MSHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDDP+KP LT+F+GYKAGMTH+VR+
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDV 60
Query: 214 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 393
++PGSK++KKE EAVTIIETPPMV VGVVGY++TP GLR+L TVWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYK 120
Query: 394 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAH 570
NW + E G+K I+ +KM +YCSV+RV+AHTQ++ +K +QKKAH
Sbjct: 121 NWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAH 180
Query: 571 IMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKK 750
+ EIQ+NGG I KV +A EK +PVD++F +DEMID I +RW +
Sbjct: 181 LNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 751 LPRKXTRVLXKLPAL 795
LPRK R L K+ +
Sbjct: 241 LPRKTHRGLRKVACI 255
Score = 33.9 bits (74), Expect = 0.14
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 765 HKGLXKVACIGTWXPSR 815
H+GL KVACIG W P+R
Sbjct: 246 HRGLRKVACIGAWHPAR 262
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 303 bits (744), Expect = 9e-83
Identities = 142/255 (55%), Positives = 181/255 (70%), Gaps = 1/255 (0%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
MSHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDD +KP TAF+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREV 60
Query: 214 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 393
++PGSK++KKE EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 120
Query: 394 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAH 570
NW + E G+K I+ +KM +Y +V+RV+AHTQ++ +K +QKKAH
Sbjct: 121 NWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAH 180
Query: 571 IMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKK 750
+MEIQ+NGGTI KV +A EK IP+++VF +DEMID I +RW +
Sbjct: 181 MMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 751 LPRKXTRVLXKLPAL 795
LPRK R L K+ +
Sbjct: 241 LPRKTHRGLRKVACI 255
Score = 33.9 bits (74), Expect = 0.14
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 765 HKGLXKVACIGTWXPSR 815
H+GL KVACIG W P+R
Sbjct: 246 HRGLRKVACIGAWHPAR 262
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 303 bits (744), Expect = 9e-83
Identities = 142/255 (55%), Positives = 181/255 (70%), Gaps = 1/255 (0%)
Frame = +1
Query: 34 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 213
MSHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDD +KP TAF+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREV 60
Query: 214 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 393
++PGSK++KKE EAVTIIETP MV VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYK
Sbjct: 61 EKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYK 120
Query: 394 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLK-QRQKKAH 570
NW + E G+K I+ +KM +Y +V+RV+AHTQ++ +K +QKKAH
Sbjct: 121 NWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAH 180
Query: 571 IMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFXQDEMIDCIXXXXXXXXXXXXSRWHTKK 750
+MEIQ+NGGTI KV +A EK IP+++VF +DEMID I +RW +
Sbjct: 181 MMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTR 240
Query: 751 LPRKXTRVLXKLPAL 795
LPRK R L K+ +
Sbjct: 241 LPRKTHRGLRKVACI 255
Score = 33.9 bits (74), Expect = 0.14
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 765 HKGLXKVACIGTWXPSR 815
H+GL KVACIG W P+R
Sbjct: 246 HRGLRKVACIGAWHPAR 262
>At4g10750.1 68417.m01755 HpcH/HpaI aldolase family protein similar
to 2,4-dihydroxydec-2-ene-1,10-dioic acid aldolase
[Sphingopyxis macrogoltabida] GI:23330203; contains Pfam
profile PF03328: HpcH/HpaI aldolase family
Length = 358
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = -1
Query: 393 FVEATSTVFRHMLRPDSQQSA*SMRGLNVSNNTDTNHRRSLDDGDSLHDLFLVDF*TGTV 214
F T T R+ P A ++ ++N + T+ + L G++L+ LFL+ F
Sbjct: 46 FSRKTLTPIRYSSSPADHSPATAVEA--ITNRSKTSLKSRLRGGETLYGLFLLSFSPTLA 103
Query: 213 RFSNHVGHTGLITD 172
+ H G+ ++ D
Sbjct: 104 EIAAHAGYDYVVVD 117
>At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family protein
similar to monoglyceride lipase from [Homo sapiens]
GI:14594904, [Mus musculus] GI:2632162; contains Pfam
profile PF00561: hydrolase, alpha/beta fold family
Length = 382
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -1
Query: 672 LXKHRIDRDRFLQMFSGPFHFVLDGTT 592
L KH + +D+ L+++ G +H +L+G T
Sbjct: 334 LHKHAVSQDKTLKLYPGGYHCILEGDT 360
>At1g29195.1 68414.m03572 expressed protein
Length = 193
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +1
Query: 160 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPP 282
+TA KA HV+++P P S ++++++ A I+ PP
Sbjct: 37 ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77
>At1g68480.1 68414.m07823 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 253
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 531 SNEAVKTATKEGSHYGNPT*RWYHRGQSEMGQRTSGETYPCRFC 662
S + K A +EGS G +G E G+ SG+ Y CRFC
Sbjct: 18 SKDGNKQALEEGSSSGQRK----KKGSKE-GKDESGKVYECRFC 56
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,251,437
Number of Sequences: 28952
Number of extensions: 405143
Number of successful extensions: 966
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -