Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_I17
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   280   2e-76
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   279   3e-76
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          26   8.3  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  280 bits (686), Expect = 2e-76
 Identities = 126/220 (57%), Positives = 165/220 (75%)
 Frame = +3

Query: 54  QHPDHGSMGFYPKKRSRRHRGKVKAXPXDDPXKPVHLTAXIGYKAGMTHVVREPDRPGSK 233
           + P HGS+GF P+KR+ R RGKVKA P DD  KPVHLTA +GYKAGMTH+VR+ DRPGSK
Sbjct: 7   EQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSK 66

Query: 234 INKKEIVEAVTIIXTPPMVCVGVVGHIXTPHGLRALLTVWAEHMSEDCRXRFYKNWYXXX 413
           ++K+EI+EAVTII TPPMV VGVVG++ TP GLR+L TVWAEH+SE+ + RFYKNW+   
Sbjct: 67  MHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSK 126

Query: 414 XXXXXXXXXXWQDELGRKSIEKDFKKMIRYCNVVRVIAHTQMKLLXQRQKKAHIMEIQLN 593
                     + +    +SI ++ +++ +YC+VVRV+AHTQ++     QKKAH+MEIQ+N
Sbjct: 127 KKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVN 184

Query: 594 GGTIEDXVKWAXEHLEKPIPVDSVFGQXEMIDCIGVTKGK 713
           GG++ D V+WA EH EK + + S F Q EMID IGVT+GK
Sbjct: 185 GGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  279 bits (685), Expect = 3e-76
 Identities = 125/220 (56%), Positives = 165/220 (75%)
 Frame = +3

Query: 54  QHPDHGSMGFYPKKRSRRHRGKVKAXPXDDPXKPVHLTAXIGYKAGMTHVVREPDRPGSK 233
           + P HGS+GF P+KR+ R RGKVKA P DD  KPVHLTA +GYKAGMTH+VR+ DRPGSK
Sbjct: 7   EQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSK 66

Query: 234 INKKEIVEAVTIIXTPPMVCVGVVGHIXTPHGLRALLTVWAEHMSEDCRXRFYKNWYXXX 413
           ++K+EI+EAVT+I TPPMV VGVVG++ TP GLR+L TVWAEH+SE+ + RFYKNW+   
Sbjct: 67  MHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSK 126

Query: 414 XXXXXXXXXXWQDELGRKSIEKDFKKMIRYCNVVRVIAHTQMKLLXQRQKKAHIMEIQLN 593
                     + +    +SI ++ +++ +YC+VVRV+AHTQ++     QKKAH+MEIQ+N
Sbjct: 127 KKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVN 184

Query: 594 GGTIEDXVKWAXEHLEKPIPVDSVFGQXEMIDCIGVTKGK 713
           GG++ D V+WA EH EK + + S F Q EMID IGVT+GK
Sbjct: 185 GGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 471 IEKDFKKMIRYCNVVRVIAHTQ 536
           ++K+F+KM   CN++RV A T+
Sbjct: 623 LKKEFEKMPLGCNILRVDAQTK 644


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,967,378
Number of Sequences: 5004
Number of extensions: 53899
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)