Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_I17
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   276   2e-74
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   274   6e-74
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847...    31   1.2  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  276 bits (676), Expect = 2e-74
 Identities = 126/221 (57%), Positives = 163/221 (73%), Gaps = 1/221 (0%)
 Frame = +3

Query: 54  QHPDHGSMGFYPKKRSRRHRGKVKAXPXDDPXKPVHLTAXIGYKAGMTHVVREPDRPGSK 233
           +HP HGS+GF P+KRS RHRGKVK+ P DD  KP HLT+ +GYKAGMTH+VRE ++PGSK
Sbjct: 7   EHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGSK 66

Query: 234 INKKEIVEAVTIIXTPPMVCVGVVGHIXTPHGLRALLTVWAEHMSEDCRXRFYKNWYXXX 413
           ++KKE  EAVTII TPP+V VG+V ++ TP GLR+L +VWA+H+SE+ R RFYKNW    
Sbjct: 67  LHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSK 126

Query: 414 XXXXXXXXXXWQDELGRKSIEKDFKKMIRYCNVVRVIAHTQM-KLLXQRQKKAHIMEIQL 590
                     +  + G+K I+   +KM +Y ++VRVIAHTQ+ K+   +QKKAH+MEIQ+
Sbjct: 127 KKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQI 186

Query: 591 NGGTIEDXVKWAXEHLEKPIPVDSVFGQXEMIDCIGVTKGK 713
           NGGTI D V +  +  EK IPVD+VF + EMID IGVTKGK
Sbjct: 187 NGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGK 227


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  274 bits (672), Expect = 6e-74
 Identities = 126/221 (57%), Positives = 162/221 (73%), Gaps = 1/221 (0%)
 Frame = +3

Query: 54  QHPDHGSMGFYPKKRSRRHRGKVKAXPXDDPXKPVHLTAXIGYKAGMTHVVREPDRPGSK 233
           +HP HGS+GF P+KRS RHRGKVK+ P DD  KP HLT+ +GYKAGMTH+VRE ++PGSK
Sbjct: 7   EHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGSK 66

Query: 234 INKKEIVEAVTIIXTPPMVCVGVVGHIXTPHGLRALLTVWAEHMSEDCRXRFYKNWYXXX 413
           ++KKE  EAVTII TPP+V VG+V ++ TP GLR+L +VWA+H+SE+ R RFYKNW    
Sbjct: 67  LHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSK 126

Query: 414 XXXXXXXXXXWQDELGRKSIEKDFKKMIRYCNVVRVIAHTQM-KLLXQRQKKAHIMEIQL 590
                     +  + G+K I+   +KM +Y +VVRVI HTQ+ K+   +QKKAH+MEIQ+
Sbjct: 127 KKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQI 186

Query: 591 NGGTIEDXVKWAXEHLEKPIPVDSVFGQXEMIDCIGVTKGK 713
           NGGTI D V +  +  EK IPVD+VF + EMID IGVTKGK
Sbjct: 187 NGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGK 227


>01_06_0083 +
           26283492-26283756,26284255-26284467,26284620-26284771,
           26284884-26285157,26285277-26285485
          Length = 370

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 470 NRKRFQEDDPLL*CCKSHCPHSNEAVXTATKEGSHYGNP 586
           N +RF  +DPLL CC  H P+   A  T  +  + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,310,107
Number of Sequences: 37544
Number of extensions: 387268
Number of successful extensions: 751
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)