Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_I17
         (895 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               291   4e-79
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         221   6e-58
SB_52432| Best HMM Match : NDUF_B7 (HMM E-Value=0.47)                  29   5.1  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  291 bits (715), Expect = 4e-79
 Identities = 134/218 (61%), Positives = 159/218 (72%), Gaps = 1/218 (0%)
 Frame = +3

Query: 60  PDHGSMGFYPKKRSRRHRGKVKAXPXDDPXKPVHLTAXIGYKAGMTHVVREPDRPGSKIN 239
           P HGS+GF P+KR +RHRGKVK+ P DD   P HLTA IG+KAGMTH++RE ++PGSK+N
Sbjct: 8   PRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVEKPGSKLN 67

Query: 240 KKEIVEAVTIIXTPPMVCVGVVGHIXTPHGLRALLTVWAEHMSEDCRXRFYKNWYXXXXX 419
           KKE VEAVTII TPPM+ VGVVG+I TP G+R L T+WAEH+SE+C+ RFYKNW      
Sbjct: 68  KKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKNWCNSKKK 127

Query: 420 XXXXXXXXWQDELGRKSIEKDFKKMIRYCNVVRVIAHTQMKLLXQRQKKAHIMEIQLNGG 599
                   W D+ G+KSIE+DF  M +YC V+RVI HTQ KLL  RQKKAHIMEIQ+NGG
Sbjct: 128 AFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQQKLLKMRQKKAHIMEIQVNGG 187

Query: 600 -TIEDXVKWAXEHLEKPIPVDSVFGQXEMIDCIGVTKG 710
             + + V W  E LE P PV  VF   EMID IGVTKG
Sbjct: 188 KDVAEKVDWCRERLENPAPVRKVFSPDEMIDVIGVTKG 225


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  221 bits (540), Expect = 6e-58
 Identities = 98/169 (57%), Positives = 121/169 (71%)
 Frame = +3

Query: 30  PACRTENXQHPDHGSMGFYPKKRSRRHRGKVKAXPXDDPXKPVHLTAXIGYKAGMTHVVR 209
           P       + P HGS+GF P+KR +RHRGKVK+ P DD   P HLTA IG+KAGMTH++R
Sbjct: 46  PKMSHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILR 105

Query: 210 EPDRPGSKINKKEIVEAVTIIXTPPMVCVGVVGHIXTPHGLRALLTVWAEHMSEDCRXRF 389
           E ++PGSK+NKKE VEAVTII TPPM+ VGVVG+I TP G+R L T+WAEH+SE+C+ RF
Sbjct: 106 EVEKPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRF 165

Query: 390 YKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCNVVRVIAHTQ 536
           YKNW              W D+ G+KSIE+DF  M +YC V+RVI HTQ
Sbjct: 166 YKNWCNSKKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQ 214


>SB_52432| Best HMM Match : NDUF_B7 (HMM E-Value=0.47)
          Length = 1250

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +3

Query: 576 MEIQLNGGTI-EDXVKWAXEHLEKPIPVDSVFGQXEMIDCIGVTKG 710
           M I L+G +I  D + W   H   P P      Q +  D IGVT G
Sbjct: 201 MLIILHGLSIAHDEILWLVRHCCNPAPRSRKLTQEDFFDSIGVTAG 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,125,232
Number of Sequences: 59808
Number of extensions: 436920
Number of successful extensions: 883
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)