Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_I17
(895 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 308 3e-84
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 308 3e-84
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 308 3e-84
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 308 3e-84
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 225 4e-59
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 225 4e-59
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 134 6e-32
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 134 6e-32
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 308 bits (757), Expect = 3e-84
Identities = 137/217 (63%), Positives = 166/217 (76%)
Frame = +3
Query: 60 PDHGSMGFYPKKRSRRHRGKVKAXPXDDPXKPVHLTAXIGYKAGMTHVVREPDRPGSKIN 239
P HG MGF PKKRSR +RG++KA P DD KP+HLTA +GYKAGMTH+VR+ D+PGSK+N
Sbjct: 9 PRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGSKVN 68
Query: 240 KKEIVEAVTIIXTPPMVCVGVVGHIXTPHGLRALLTVWAEHMSEDCRXRFYKNWYXXXXX 419
KKE+VEAVTI+ TPPMV GV G++ TP G RAL T+WAEH+SE+ R RFY NW
Sbjct: 69 KKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKK 128
Query: 420 XXXXXXXXWQDELGRKSIEKDFKKMIRYCNVVRVIAHTQMKLLXQRQKKAHIMEIQLNGG 599
WQDE G+K IE DF K+ +YC+ +RVIAHTQMK+L +RQKKAH++EIQ+NGG
Sbjct: 129 AFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGG 188
Query: 600 TIEDXVKWAXEHLEKPIPVDSVFGQXEMIDCIGVTKG 710
TIE V WA EHLEK + VD+VF Q EMID IGVT+G
Sbjct: 189 TIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRG 225
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 308 bits (757), Expect = 3e-84
Identities = 137/217 (63%), Positives = 166/217 (76%)
Frame = +3
Query: 60 PDHGSMGFYPKKRSRRHRGKVKAXPXDDPXKPVHLTAXIGYKAGMTHVVREPDRPGSKIN 239
P HG MGF PKKRSR +RG++KA P DD KP+HLTA +GYKAGMTH+VR+ D+PGSK+N
Sbjct: 9 PRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGSKVN 68
Query: 240 KKEIVEAVTIIXTPPMVCVGVVGHIXTPHGLRALLTVWAEHMSEDCRXRFYKNWYXXXXX 419
KKE+VEAVTI+ TPPMV GV G++ TP G RAL T+WAEH+SE+ R RFY NW
Sbjct: 69 KKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKK 128
Query: 420 XXXXXXXXWQDELGRKSIEKDFKKMIRYCNVVRVIAHTQMKLLXQRQKKAHIMEIQLNGG 599
WQDE G+K IE DF K+ +YC+ +RVIAHTQMK+L +RQKKAH++EIQ+NGG
Sbjct: 129 AFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGG 188
Query: 600 TIEDXVKWAXEHLEKPIPVDSVFGQXEMIDCIGVTKG 710
TIE V WA EHLEK + VD+VF Q EMID IGVT+G
Sbjct: 189 TIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRG 225
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 308 bits (757), Expect = 3e-84
Identities = 137/217 (63%), Positives = 166/217 (76%)
Frame = +3
Query: 60 PDHGSMGFYPKKRSRRHRGKVKAXPXDDPXKPVHLTAXIGYKAGMTHVVREPDRPGSKIN 239
P HG MGF PKKRSR +RG++KA P DD KP+HLTA +GYKAGMTH+VR+ D+PGSK+N
Sbjct: 9 PRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGSKVN 68
Query: 240 KKEIVEAVTIIXTPPMVCVGVVGHIXTPHGLRALLTVWAEHMSEDCRXRFYKNWYXXXXX 419
KKE+VEAVTI+ TPPMV GV G++ TP G RAL T+WAEH+SE+ R RFY NW
Sbjct: 69 KKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKK 128
Query: 420 XXXXXXXXWQDELGRKSIEKDFKKMIRYCNVVRVIAHTQMKLLXQRQKKAHIMEIQLNGG 599
WQDE G+K IE DF K+ +YC+ +RVIAHTQMK+L +RQKKAH++EIQ+NGG
Sbjct: 129 AFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGG 188
Query: 600 TIEDXVKWAXEHLEKPIPVDSVFGQXEMIDCIGVTKG 710
TIE V WA EHLEK + VD+VF Q EMID IGVT+G
Sbjct: 189 TIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRG 225
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 308 bits (757), Expect = 3e-84
Identities = 137/217 (63%), Positives = 166/217 (76%)
Frame = +3
Query: 60 PDHGSMGFYPKKRSRRHRGKVKAXPXDDPXKPVHLTAXIGYKAGMTHVVREPDRPGSKIN 239
P HG MGF PKKRSR +RG++KA P DD KP+HLTA +GYKAGMTH+VR+ D+PGSK+N
Sbjct: 9 PRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGSKVN 68
Query: 240 KKEIVEAVTIIXTPPMVCVGVVGHIXTPHGLRALLTVWAEHMSEDCRXRFYKNWYXXXXX 419
KKE+VEAVTI+ TPPMV GV G++ TP G RAL T+WAEH+SE+ R RFY NW
Sbjct: 69 KKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKK 128
Query: 420 XXXXXXXXWQDELGRKSIEKDFKKMIRYCNVVRVIAHTQMKLLXQRQKKAHIMEIQLNGG 599
WQDE G+K IE DF K+ +YC+ +RVIAHTQMK+L +RQKKAH++EIQ+NGG
Sbjct: 129 AFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGG 188
Query: 600 TIEDXVKWAXEHLEKPIPVDSVFGQXEMIDCIGVTKG 710
TIE V WA EHLEK + VD+VF Q EMID IGVT+G
Sbjct: 189 TIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRG 225
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 225 bits (549), Expect = 4e-59
Identities = 98/160 (61%), Positives = 119/160 (74%)
Frame = +3
Query: 60 PDHGSMGFYPKKRSRRHRGKVKAXPXDDPXKPVHLTAXIGYKAGMTHVVREPDRPGSKIN 239
P HG MGF PKKRSR +RG++KA P DD KP+HLTA +GYKAGMTH+VR+ D+PGSK+N
Sbjct: 9 PRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGSKVN 68
Query: 240 KKEIVEAVTIIXTPPMVCVGVVGHIXTPHGLRALLTVWAEHMSEDCRXRFYKNWYXXXXX 419
KKE+VEAVTI+ TPPMV GV G++ TP G RAL T+WAEH+SE+ R RFY NW
Sbjct: 69 KKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKK 128
Query: 420 XXXXXXXXWQDELGRKSIEKDFKKMIRYCNVVRVIAHTQM 539
WQDE G+K IE DF K+ +YC+ +RVIAHTQM
Sbjct: 129 AFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 225 bits (549), Expect = 4e-59
Identities = 98/160 (61%), Positives = 119/160 (74%)
Frame = +3
Query: 60 PDHGSMGFYPKKRSRRHRGKVKAXPXDDPXKPVHLTAXIGYKAGMTHVVREPDRPGSKIN 239
P HG MGF PKKRSR +RG++KA P DD KP+HLTA +GYKAGMTH+VR+ D+PGSK+N
Sbjct: 9 PRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGSKVN 68
Query: 240 KKEIVEAVTIIXTPPMVCVGVVGHIXTPHGLRALLTVWAEHMSEDCRXRFYKNWYXXXXX 419
KKE+VEAVTI+ TPPMV GV G++ TP G RAL T+WAEH+SE+ R RFY NW
Sbjct: 69 KKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKK 128
Query: 420 XXXXXXXXWQDELGRKSIEKDFKKMIRYCNVVRVIAHTQM 539
WQDE G+K IE DF K+ +YC+ +RVIAHTQM
Sbjct: 129 AFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 134 bits (325), Expect = 6e-32
Identities = 60/89 (67%), Positives = 73/89 (82%)
Frame = +3
Query: 444 WQDELGRKSIEKDFKKMIRYCNVVRVIAHTQMKLLXQRQKKAHIMEIQLNGGTIEDXVKW 623
WQDE G+K IE DF K+ +YC+ +RVIAHTQMK+L +RQKKAH++EIQ+NGGTIE V W
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDW 98
Query: 624 AXEHLEKPIPVDSVFGQXEMIDCIGVTKG 710
A EHLEK + VD+VF Q EMID IGVT+G
Sbjct: 99 AREHLEKQVQVDTVFAQDEMIDTIGVTRG 127
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +3
Query: 60 PDHGSMGFYPKKRSRRHRGKVKA 128
P HG MGF PKKRSR +RG++KA
Sbjct: 9 PRHGHMGFTPKKRSRTYRGRIKA 31
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 134 bits (325), Expect = 6e-32
Identities = 60/89 (67%), Positives = 73/89 (82%)
Frame = +3
Query: 444 WQDELGRKSIEKDFKKMIRYCNVVRVIAHTQMKLLXQRQKKAHIMEIQLNGGTIEDXVKW 623
WQDE G+K IE DF K+ +YC+ +RVIAHTQMK+L +RQKKAH++EIQ+NGGTIE V W
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDW 98
Query: 624 AXEHLEKPIPVDSVFGQXEMIDCIGVTKG 710
A EHLEK + VD+VF Q EMID IGVT+G
Sbjct: 99 AREHLEKQVQVDTVFAQDEMIDTIGVTRG 127
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +3
Query: 60 PDHGSMGFYPKKRSRRHRGKVKA 128
P HG MGF PKKRSR +RG++KA
Sbjct: 9 PRHGHMGFTPKKRSRTYRGRIKA 31
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,774,816
Number of Sequences: 27780
Number of extensions: 320134
Number of successful extensions: 678
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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