Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_I17
         (895 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   276   2e-74
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   267   6e-72
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   267   6e-72
At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family prote...    33   0.34 
At1g29195.1 68414.m03572 expressed protein                             31   0.78 
At2g25940.1 68415.m03113 vacuolar processing enzyme alpha / alph...    29   5.5  
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil...    29   5.5  
At1g53440.1 68414.m06057 leucine-rich repeat family protein / pr...    28   7.3  

>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  276 bits (676), Expect = 2e-74
 Identities = 126/221 (57%), Positives = 162/221 (73%), Gaps = 1/221 (0%)
 Frame = +3

Query: 54  QHPDHGSMGFYPKKRSRRHRGKVKAXPXDDPXKPVHLTAXIGYKAGMTHVVREPDRPGSK 233
           +HP HGS+GF P+KR+ RHRGKVKA P DDP KP  LT+ +GYKAGMTH+VR+ ++PGSK
Sbjct: 7   EHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPGSK 66

Query: 234 INKKEIVEAVTIIXTPPMVCVGVVGHIXTPHGLRALLTVWAEHMSEDCRXRFYKNWYXXX 413
           ++KKE  EAVTII TPPMV VGVVG++ TP GLR+L TVWA+H+SE+ R RFYKNW    
Sbjct: 67  LHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKNWAKSK 126

Query: 414 XXXXXXXXXXWQDELGRKSIEKDFKKMIRYCNVVRVIAHTQM-KLLXQRQKKAHIMEIQL 590
                      + E G+K I+   +KM +YC+V+RV+AHTQ+ K+   +QKKAH+ EIQ+
Sbjct: 127 KKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNEIQI 186

Query: 591 NGGTIEDXVKWAXEHLEKPIPVDSVFGQXEMIDCIGVTKGK 713
           NGG I   V +A    EK +PVD++F + EMID IGVTKGK
Sbjct: 187 NGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGK 227


>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  267 bits (655), Expect = 6e-72
 Identities = 125/221 (56%), Positives = 158/221 (71%), Gaps = 1/221 (0%)
 Frame = +3

Query: 54  QHPDHGSMGFYPKKRSRRHRGKVKAXPXDDPXKPVHLTAXIGYKAGMTHVVREPDRPGSK 233
           +HP HGS+GF P+KR+ RHRGKVKA P DD  KP   TA +GYKAGMTH+VRE ++PGSK
Sbjct: 7   EHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGSK 66

Query: 234 INKKEIVEAVTIIXTPPMVCVGVVGHIXTPHGLRALLTVWAEHMSEDCRXRFYKNWYXXX 413
           ++KKE  EAVTII TP MV VGVV ++ TP GLR+L TVWA+H+SE+ R RFYKNW    
Sbjct: 67  LHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKSK 126

Query: 414 XXXXXXXXXXWQDELGRKSIEKDFKKMIRYCNVVRVIAHTQM-KLLXQRQKKAHIMEIQL 590
                     +  E G+K I+   +KM +Y  V+RV+AHTQ+ K+   +QKKAH+MEIQ+
Sbjct: 127 KKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQI 186

Query: 591 NGGTIEDXVKWAXEHLEKPIPVDSVFGQXEMIDCIGVTKGK 713
           NGGTI   V +A    EK IP+++VF + EMID IGVTKGK
Sbjct: 187 NGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGK 227


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  267 bits (655), Expect = 6e-72
 Identities = 125/221 (56%), Positives = 158/221 (71%), Gaps = 1/221 (0%)
 Frame = +3

Query: 54  QHPDHGSMGFYPKKRSRRHRGKVKAXPXDDPXKPVHLTAXIGYKAGMTHVVREPDRPGSK 233
           +HP HGS+GF P+KR+ RHRGKVKA P DD  KP   TA +GYKAGMTH+VRE ++PGSK
Sbjct: 7   EHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGSK 66

Query: 234 INKKEIVEAVTIIXTPPMVCVGVVGHIXTPHGLRALLTVWAEHMSEDCRXRFYKNWYXXX 413
           ++KKE  EAVTII TP MV VGVV ++ TP GLR+L TVWA+H+SE+ R RFYKNW    
Sbjct: 67  LHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKSK 126

Query: 414 XXXXXXXXXXWQDELGRKSIEKDFKKMIRYCNVVRVIAHTQM-KLLXQRQKKAHIMEIQL 590
                     +  E G+K I+   +KM +Y  V+RV+AHTQ+ K+   +QKKAH+MEIQ+
Sbjct: 127 KKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQI 186

Query: 591 NGGTIEDXVKWAXEHLEKPIPVDSVFGQXEMIDCIGVTKGK 713
           NGGTI   V +A    EK IP+++VF + EMID IGVTKGK
Sbjct: 187 NGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGK 227


>At1g77420.1 68414.m09016 hydrolase, alpha/beta fold family protein
           similar to monoglyceride lipase from [Homo sapiens]
           GI:14594904, [Mus musculus] GI:2632162; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 382

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = -3

Query: 722 PCILALGDTNAVNH----FXLAKHRIDRDRFLQMFXGPFHXVLDGTT 594
           P ++  GDT+ V        L KH + +D+ L+++ G +H +L+G T
Sbjct: 314 PLLILHGDTDKVTDPTVSKFLHKHAVSQDKTLKLYPGGYHCILEGDT 360


>At1g29195.1 68414.m03572 expressed protein
          Length = 193

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 162 LTAXIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIXTPP 284
           +TA    KA   HV+++P  P S  ++++++ A  I+  PP
Sbjct: 37  ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77


>At2g25940.1 68415.m03113 vacuolar processing enzyme alpha /
           alpha-VPE identical to SP|P49047 Vacuolar processing
           enzyme, alpha-isozyme precursor (EC 3.4.22.-)
           (Alpha-VPE) {Arabidopsis thaliana}
          Length = 478

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -1

Query: 439 LLALVKAFFLH---LYQFL*KRXRQSSDICSAQTVKRARSP*GVSMCPTTPT 293
           L +LV+AF  H   L Q+  K  R  +++C+A    R      +  CPT PT
Sbjct: 415 LKSLVRAFERHCGSLSQYGIKHMRSIANMCNAGIQMRQMEEAAMQACPTIPT 466


>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
           to U2 small nuclear ribonucleoprotein auxiliary factor
           35 kD subunit related protein 1 (sp|Q15695)
          Length = 757

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 24  RLPACRTENXQHPDHGSMGFYPKKRSRRHRGKVKAXPXDD 143
           R P+ R+ +  H DH ++G  P  RSR++ G  +    +D
Sbjct: 460 RQPSRRSRSRDH-DHANVGSTPSYRSRKYHGDTQDSTRED 498


>At1g53440.1 68414.m06057 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1035

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 579 EIQLNGGTIEDXVKWAXEHLEKPIPVDSVFGQXEMIDCIGVT 704
           E+Q+NG T+E  +KW  +     IP   V+G   +I  I VT
Sbjct: 555 EVQVNGSTLEIHLKWTGKG-TNVIPTRGVYG--PLISAITVT 593


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,033,619
Number of Sequences: 28952
Number of extensions: 303957
Number of successful extensions: 607
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)