Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_I16
(856 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 210 3e-53
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 199 6e-50
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 186 6e-46
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 175 1e-42
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 159 1e-37
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 129 8e-29
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 91 4e-17
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 90 6e-17
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 89 1e-16
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 86 1e-15
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 80 8e-14
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 75 3e-12
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 74 4e-12
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 74 4e-12
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 73 7e-12
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 70 9e-11
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 66 8e-10
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 65 2e-09
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 63 7e-09
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 63 1e-08
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 63 1e-08
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 60 7e-08
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 59 2e-07
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 45 0.003
UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN full-le... 40 0.080
UniRef50_Q69NC6 Cluster: Putative uncharacterized protein OJ1742... 36 1.7
UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1; ... 34 4.0
UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1; ... 34 5.3
UniRef50_Q1ITY7 Cluster: Amidohydrolase 2 precursor; n=1; Acidob... 33 6.9
UniRef50_A2YFM3 Cluster: Putative uncharacterized protein; n=3; ... 33 6.9
UniRef50_UPI0000E47AFC Cluster: PREDICTED: similar to zinc finge... 33 9.2
UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsi... 33 9.2
UniRef50_O82487 Cluster: T12H20.10 protein; n=15; Magnoliophyta|... 33 9.2
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 210 bits (514), Expect = 3e-53
Identities = 90/116 (77%), Positives = 105/116 (90%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F P HGS+GF P+KRS RHRGKVK+FPKDDPSKPVHLTAF+GYKAGMTH+VRE DRPGS
Sbjct: 6 FSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGS 65
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
K+NKKE+VEAVTI+ETPPMV VG+VGY+ETP GLR TV+AEH+S++C+RRFYKN
Sbjct: 66 KVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Score = 107 bits (258), Expect = 3e-22
Identities = 45/70 (64%), Positives = 57/70 (81%)
Frame = +2
Query: 467 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 646
WQDE G+K +EKDF M +YC V+RVIAHTQM+LL RQKKAH+MEIQ+NGGT+ +K+ W
Sbjct: 137 WQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDW 196
Query: 647 AXEHLEKPIP 676
A E LE+ +P
Sbjct: 197 ARERLEQQVP 206
Score = 52.0 bits (119), Expect = 2e-05
Identities = 26/46 (56%), Positives = 28/46 (60%)
Frame = +3
Query: 678 VDSVFXQDEMIDCIGVXKGXGXKGVTSXGXQXXYPXXXHKGLXKXA 815
V+ VF QDEMID IGV KG G KGVTS P H+GL K A
Sbjct: 207 VNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVA 252
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 199 bits (486), Expect = 6e-50
Identities = 84/116 (72%), Positives = 100/116 (86%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Score = 52.4 bits (120), Expect = 1e-05
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +2
Query: 467 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 562
WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 137 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
Score = 41.5 bits (93), Expect = 0.026
Identities = 21/43 (48%), Positives = 23/43 (53%)
Frame = +3
Query: 687 VFXQDEMIDCIGVXKGXGXKGVTSXGXQXXYPXXXHKGLXKXA 815
V +MID IGV +G G KGVTS P HKGL K A
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVA 204
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 186 bits (453), Expect = 6e-46
Identities = 80/116 (68%), Positives = 98/116 (84%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F P HG +GF P KRS RHRGKVK +P+DDPS+PVHLTAF+GYKAGMTH +RE RPG
Sbjct: 6 FSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGL 65
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
KI+K+E VEAVTI+ETPP+V VGVVGY+ TP GLR+ T++AEH+S++CRRRFYK+
Sbjct: 66 KISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 121
Score = 103 bits (247), Expect = 6e-21
Identities = 45/70 (64%), Positives = 54/70 (77%)
Frame = +2
Query: 467 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 646
W+D G+K ++KDF M +YC V+RVI HTQMKLL RQKKAHIMEIQLNGGT+ +KV W
Sbjct: 137 WRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAW 196
Query: 647 AXEHLEKPIP 676
A LEK +P
Sbjct: 197 AQARLEKQVP 206
Score = 47.6 bits (108), Expect = 4e-04
Identities = 25/46 (54%), Positives = 26/46 (56%)
Frame = +3
Query: 678 VDSVFXQDEMIDCIGVXKGXGXKGVTSXGXQXXYPXXXHKGLXKXA 815
V SVF Q E+ID I V KG G KGVTS P HKGL K A
Sbjct: 207 VHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVA 252
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 175 bits (426), Expect = 1e-42
Identities = 75/116 (64%), Positives = 95/116 (81%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F+HP HG +GF P+KRSR+ RG+ ++FPKDDPS+ HLT+F+ YKAGMTH+VR+ DRPGS
Sbjct: 57 FEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVRDVDRPGS 116
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
K+NKKE+VE VTI+E PPMV VG+VGY +TP G + + TVWA H S + RRRFYKN
Sbjct: 117 KVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYKN 172
Score = 56.8 bits (131), Expect = 7e-07
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Frame = +2
Query: 482 GRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQ---KKAHIMEIQLNGGTIEDKVKWAX 652
GR + + K + ++RV+AHTQ++ L+ + KKAH+ EIQ+NGGTI K++ A
Sbjct: 193 GRLAEARTLKAFEKKADIIRVVAHTQLRKLRNNRVGVKKAHVSEIQINGGTIAQKIELAK 252
Query: 653 EHLEKPI 673
LEK +
Sbjct: 253 SLLEKEV 259
Score = 37.5 bits (83), Expect = 0.43
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = +3
Query: 678 VDSVFXQDEMIDCIGVXKGXGXKGVTSXGXQXXYPXXXHKGLXKXA 815
+DSVF Q E D V KG G GV P H+GL K A
Sbjct: 261 IDSVFQQSEACDVCAVTKGHGFTGVVKRWGVACLPRKTHRGLRKVA 306
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 159 bits (385), Expect = 1e-37
Identities = 71/117 (60%), Positives = 88/117 (75%)
Frame = +1
Query: 46 NFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 225
NF P HGS+GF P+K S H GKVK FPKDD SKPVHLT F+ +KA MTH++++ DRP
Sbjct: 5 NFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKVDRPE 64
Query: 226 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 396
SK+NKKE+VE V I+ETPPMV +G+VGYIE P GL V+AEH+S ++ FYKN
Sbjct: 65 SKMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHISGKSKKCFYKN 121
Score = 62.9 bits (146), Expect = 1e-08
Identities = 25/48 (52%), Positives = 37/48 (77%)
Frame = +2
Query: 476 ELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNG 619
++G++ +E +FK M +YC V+ ++AHTQM LL QKKAH+MEIQ+ G
Sbjct: 134 DMGKRQLEMEFKSMKKYCQVICIVAHTQMCLLSLHQKKAHLMEIQVMG 181
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 129 bits (312), Expect = 8e-29
Identities = 58/97 (59%), Positives = 77/97 (79%)
Frame = +1
Query: 91 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTII 270
K S +H+GKV FPKD SKPV+L+AF+GY+AGMTHVVR+ DRPGSK++KKE+VE VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 271 ETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 381
ET P + VG VG ET GL+ +V+A+H+S +C+R
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECKR 97
Score = 40.3 bits (90), Expect = 0.060
Identities = 21/43 (48%), Positives = 28/43 (65%)
Frame = +2
Query: 548 AHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAXEHLEKPIP 676
A TQM LL QKKAH+ E Q+N G + K+ WA + LE+ +P
Sbjct: 121 ALTQMCLLPLCQKKAHLTESQVNRGPVA-KLDWAHKKLEQQVP 162
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 90.6 bits (215), Expect = 4e-17
Identities = 55/129 (42%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GS+GF P+KR+ R +VK +P+ D KPV L AF+GY+AGMTHV DRPG +
Sbjct: 9 PRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPGRPTS 67
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPH-GLRALLTVWAEHMSEDCRRRFYKNCMGFDL 414
KEI VTI+ETPPM V Y P+ G +L WA+ E +R FD
Sbjct: 68 GKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRRISTLGSFDT 127
Query: 415 INQVQMQEE 441
++ EE
Sbjct: 128 DKMLKSLEE 136
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 90.2 bits (214), Expect = 6e-17
Identities = 45/99 (45%), Positives = 61/99 (61%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GSMGF P+KR+ R G+VK++P+ D S V + F G+KAGMTHV+ PGS
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSA 65
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWA 354
E+ +AVT++E PPM + V GY TP+G + WA
Sbjct: 66 GAEVRKAVTVVEVPPMRVLAVRGYKMTPYGKQTAGEAWA 104
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 89.4 bits (212), Expect = 1e-16
Identities = 42/103 (40%), Positives = 65/103 (63%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GSMGF P+KR+ R G++ ++P+ + S+ + + F G+KAGMTHV+ P S
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSA 65
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMS 366
+EI +AVT++E PPM + V GY TP+G++ +WA+ S
Sbjct: 66 GQEIRKAVTVVEVPPMKVLAVRGYHMTPYGMQTAGEIWADSSS 108
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 85.8 bits (203), Expect = 1e-15
Identities = 45/108 (41%), Positives = 58/108 (53%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GSMGF P+KR+ + ++P DD V L F GYKAGMTHVV D+ +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTE 64
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 381
E VT++ETPPM V Y +TP+G + L VWA+ E R
Sbjct: 65 GMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDR 112
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 79.8 bits (188), Expect = 8e-14
Identities = 38/100 (38%), Positives = 55/100 (55%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GS+ F P+KR+ R +++++P ++ V + F GYKAGMTH + D P S
Sbjct: 12 PRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTE 68
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 357
+EI VTI++ PPM + Y TP G R + WAE
Sbjct: 69 GEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAE 108
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 74.5 bits (175), Expect = 3e-12
Identities = 44/100 (44%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GS G P+KR+ +V+++P D KP+ AF+GYK GMTHV+ DR
Sbjct: 9 PRRGSAGLRPRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMIDDREHVDTA 65
Query: 238 KKEIVEAVTIIETPPMVCVG--VVGYIETPHGLRALLTVW 351
+EI VT+IETPPMV +G V GY + G AL VW
Sbjct: 66 GQEIFVPVTVIETPPMVVLGARVYGY-DPNRGRYALTEVW 104
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 74.1 bits (174), Expect = 4e-12
Identities = 39/110 (35%), Positives = 57/110 (51%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GS +YP+KR+R +V+ +P++ F GYK GM HV+ S
Sbjct: 7 PRRGSRAYYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFY 62
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF 387
+E A T+IE PP+ V V Y +TP+G + L VWA+ + +D R F
Sbjct: 63 GQERFYAATVIEVPPLKVVAVRVYEKTPYGKKTLCEVWAKDLPKDLERVF 112
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 74.1 bits (174), Expect = 4e-12
Identities = 41/115 (35%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Frame = +1
Query: 46 NFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 225
N P GS+ F P+KR++R +++++P++D V L AF YKAGM+H + D P
Sbjct: 4 NINRPRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPK 60
Query: 226 SKINKKEIVEAVTIIETPPM-VC-VGVVGYIETPHGLRALLTVWAEHMSEDCRRR 384
S +E+ +TI+E PP+ VC + V G E + L L VWA+++ ++ R+
Sbjct: 61 SPNAGQEVFTPITILEAPPINVCAIRVYGRNERNY-LTTLTEVWADNLDKELERK 114
Score = 41.1 bits (92), Expect = 0.035
Identities = 23/63 (36%), Positives = 37/63 (58%)
Frame = +2
Query: 485 RKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAXEHLE 664
RK++E D + + VRV+ HT KL +KK I+EI++ G IE+++ +A E L
Sbjct: 123 RKTVE-DLEALKDKIEDVRVLVHTNPKLTCLPKKKPEILEIRIGGKDIEERLNYAKEILG 181
Query: 665 KPI 673
K +
Sbjct: 182 KQL 184
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 73.3 bits (172), Expect = 7e-12
Identities = 37/84 (44%), Positives = 52/84 (61%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GS+GF P+KR++ +++++PK+ V + F GYKAGMTH++ D PG N
Sbjct: 7 PRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG-LTN 62
Query: 238 KKEIVEAVTIIETPPMVCVGVVGY 309
KEI VTIIETPP+ G+ Y
Sbjct: 63 GKEIFMPVTIIETPPLRVFGIRAY 86
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 69.7 bits (163), Expect = 9e-11
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPK--DDPSKPVHLTAFIGYKAGMTHVVREPDRPGSK 231
P GS+G+ P+ R+R + K++ + + D P + F+G+KAGM+H+V DRP S
Sbjct: 7 PRRGSLGYSPRVRARSQKPKMRNWAELGDQPK----IQGFVGFKAGMSHIVMVDDRPHSA 62
Query: 232 INKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVW 351
EI VTI+E P M G+ Y ++P+G + + W
Sbjct: 63 TEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAW 102
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 66.5 bits (155), Expect = 8e-10
Identities = 33/100 (33%), Positives = 56/100 (56%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GS+ + P+ R++ +++A+PK D +P + A G+KAG +V DR
Sbjct: 9 PRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSIDDREKVPNA 67
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 357
K++V T++ TPP++ +G+ GY + GL A V+AE
Sbjct: 68 GKQLVSLGTVLVTPPVLILGIRGYSKDHDGLHAEFDVYAE 107
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 65.3 bits (152), Expect = 2e-09
Identities = 33/84 (39%), Positives = 45/84 (53%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GS G P+KRS + +P+ + P L F+GYK GMTHV D P S N
Sbjct: 9 PRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMIDDWPNSPTN 67
Query: 238 KKEIVEAVTIIETPPMVCVGVVGY 309
KEI VT++E PP++ + + Y
Sbjct: 68 GKEIYMPVTVLEVPPIIPLALRAY 91
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 63.3 bits (147), Expect = 7e-09
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 19/120 (15%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFP------------------KDDPSKPVHLTAFI 174
+ P HGS+G P+KR+ + +++++P K KPV L ++
Sbjct: 6 YSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV-LLGYV 64
Query: 175 GYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGY-IETPHGLRALLTVW 351
YKAGM+H + DRP + + KEI VT+++ PP++ +G+ GY I HGL + VW
Sbjct: 65 AYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLSFGEVW 124
Score = 34.3 bits (75), Expect = 4.0
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Frame = +2
Query: 476 ELGRKSIEKDFKKMIRYCSV-----VRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKV 640
E G K +E ++K+ + +RVIA T L +KK I+EI++ GGT+ +++
Sbjct: 175 EYGFKFLENNWKEKLERLKAAELADIRVIASTIPVLSGIGKKKPEIIEIKIGGGTLSERI 234
Query: 641 KWAXEHL 661
+A + L
Sbjct: 235 DYAEKLL 241
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 62.9 bits (146), Expect = 1e-08
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Frame = +1
Query: 55 HPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 234
H GSM +YP+ R++ +++++P + S PV + F G+K GMTHV R S
Sbjct: 6 HSRRGSMAYYPRVRAKSIEPRIRSWP--EISGPVKVQGFAGFKVGMTHVEMVDYRKTSVT 63
Query: 235 NKKEIVEAVTIIETPPMVCVGVVGYIETPHG-LRALLTVWAEHMSED 372
+ I VT+IE PP+ +G+ Y E G + + W +++ ++
Sbjct: 64 AGQPIFVPVTVIEVPPLDVIGIRLYDEDEEGNMVVVYEKWTQNLDKE 110
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 62.9 bits (146), Expect = 1e-08
Identities = 34/112 (30%), Positives = 59/112 (52%)
Frame = +1
Query: 58 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 237
P GSMGF+P+KR+ R ++K +PK + KP+ AF YK GMTH + IN
Sbjct: 9 PRRGSMGFWPRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNIN 58
Query: 238 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 393
+ + VT++E P ++ +G Y + L+ + +++ + + R+ K
Sbjct: 59 GERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK 110
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 60.1 bits (139), Expect = 7e-08
Identities = 34/100 (34%), Positives = 52/100 (52%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F+HP GS+GF PKKRS R K + + +++ F K THV+R + S
Sbjct: 6 FEHPRIGSLGFLPKKRSNRIFPSSKTYKEIIHIYYPYISQFASLKVASTHVLRICNIVSS 65
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTV 348
K + I++ VT++E PP+ VG+ Y + L L T+
Sbjct: 66 KSYQNPIIDEVTLMECPPIEVVGLCAYALSSGHLVKLKTI 105
Score = 44.0 bits (99), Expect = 0.005
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +3
Query: 678 VDSVFXQDEMIDCIGVXKGXGXKGVTSXGXQXXYPXXXHKGLXKXA 815
++S+F ++++ID IG+ KG G KGV S P H+GL K A
Sbjct: 189 INSIFHENDIIDAIGITKGHGTKGVVSRWGITRLPRKTHRGLRKVA 234
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 58.8 bits (136), Expect = 2e-07
Identities = 31/108 (28%), Positives = 56/108 (51%)
Frame = +1
Query: 49 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 228
F P GS+ + P+ R+R +++ +P+ +P L A G+KAG +V DR +
Sbjct: 6 FSQPRRGSLAYSPRGRARSMEARIRGWPERQ-GEP-RLLAHAGFKAGCIQIVSIDDREHT 63
Query: 229 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSED 372
K++V T++ TPP+ +G+ GY + +G V+AE + +
Sbjct: 64 PNAGKQLVSLGTVLVTPPLHVLGMRGYSKGHYGRHVKFDVFAEDLPRE 111
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 44.8 bits (101), Expect = 0.003
Identities = 30/85 (35%), Positives = 38/85 (44%)
Frame = -1
Query: 676 RDRFLQMFXGPFHFVLDGTTVKLDFHNVXXXXXXXXXXXXSVGNDSYNTTVADHLLEIFF 497
R+ F ++F GP +FV DGTTV LDF V V DS N +V + F
Sbjct: 71 RNFFFKVFFGPVNFVGDGTTVDLDFSQVSFLLRQWSLLDLGVSQDSDNRSVLLDSGQFSF 130
Query: 496 Y*FASKLILPFLTGFSESLLLAFVP 422
F + F F E LL F+P
Sbjct: 131 NLFGVSGV--FTRVFGEGFLLGFIP 153
>UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3; n=1;
Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3 - Mus
musculus (Mouse)
Length = 109
Score = 39.9 bits (89), Expect = 0.080
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +1
Query: 106 HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 243
HR + K FPK+D K HL F+ +A MT+ V E +R G K +K
Sbjct: 8 HRIQAKDFPKEDLPKSAHLIVFLVSRAVMTYFVWEINRSGPKWTRK 53
>UniRef50_Q69NC6 Cluster: Putative uncharacterized protein
OJ1742_G01.32; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1742_G01.32 - Oryza sativa subsp. japonica (Rice)
Length = 100
Score = 35.5 bits (78), Expect = 1.7
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 240 ERDRGGCHHHRDSSDGLCRCCWIH*DPSWTTRSVD 344
E DRG CHH+ S GLCR C + P+ T V+
Sbjct: 36 EGDRGCCHHYLTGSPGLCRRCPLRAHPAATGFEVE 70
>UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1205
Score = 34.3 bits (75), Expect = 4.0
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +1
Query: 91 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH--VVREPDRPGSKINKKEIVEAVT 264
K +++ K+K +++ K + AFI A ++ +R DR ++N I + T
Sbjct: 19 KANKKKAAKLKKLEQNEALKGRNPKAFISQAAYASNRLTIRNLDREAKRVNLPVIDRSGT 78
Query: 265 IIETPPMVCVGVVG 306
+ETPP V + VVG
Sbjct: 79 AVETPPYV-IAVVG 91
>UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1;
Sulfurovum sp. NBC37-1|Rep: Putative uncharacterized
protein - Sulfurovum sp. (strain NBC37-1)
Length = 135
Score = 33.9 bits (74), Expect = 5.3
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 467 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 622
WQD K I+KD+ + YC +R+ H +L ++ K HI+ + G
Sbjct: 29 WQDNSDAKYIQKDWNGAMLYCRQLRLAGHNDWRLPSIKELK-HILSTEPRDG 79
>UniRef50_Q1ITY7 Cluster: Amidohydrolase 2 precursor; n=1;
Acidobacteria bacterium Ellin345|Rep: Amidohydrolase 2
precursor - Acidobacteria bacterium (strain Ellin345)
Length = 380
Score = 33.5 bits (73), Expect = 6.9
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 539 RVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAXEHLEKPIPGRFCV 691
R+ H K L R K +I I + G DK++ + + KP PGRF V
Sbjct: 73 RIEEHMDPKELVARMDKLNIKSIVILTGMWGDKLQHVIDEMVKPYPGRFLV 123
>UniRef50_A2YFM3 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 310
Score = 33.5 bits (73), Expect = 6.9
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +3
Query: 9 FSLRLSSSMSHRKFSAPRSWVYGILSQKE 95
FSL L+ S S+R+F P+SWV+G+ + ++
Sbjct: 165 FSLGLNLSTSNRQFVPPKSWVFGMAAMRK 193
>UniRef50_UPI0000E47AFC Cluster: PREDICTED: similar to zinc finger
protein; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to zinc finger protein -
Strongylocentrotus purpuratus
Length = 695
Score = 33.1 bits (72), Expect = 9.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 514 LLEIFFY*FASKLILPFLTGFSESLLLAFVPD*LNQTPCSFCRSD 380
L ++ F F+ +LP L F E+ LL + PD + C CR +
Sbjct: 20 LCQVCFERFSKPKVLPCLHSFCEACLLRYAPDGSHTIRCPLCRQE 64
>UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsis
invicta virus 1|Rep: Structural polyprotein - Solenopsis
invicta virus 1
Length = 1137
Score = 33.1 bits (72), Expect = 9.2
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -2
Query: 285 HRRSLDDGDSLHDLFLVDF*TGTVRFSNHVGHTGLITDKSSQMNRFARVV 136
HRR + ++ D+ LVD T++ VG GLITD +S ++ A V
Sbjct: 475 HRRDVTAARAIADMILVDERDATMQVQAEVGGQGLITDIASTVSAVAGAV 524
>UniRef50_O82487 Cluster: T12H20.10 protein; n=15;
Magnoliophyta|Rep: T12H20.10 protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 358
Score = 33.1 bits (72), Expect = 9.2
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = -2
Query: 411 IKPHAVFVEATSTVFRHMLRPDSQQSA*SMRGLNVSNNTDTNHRRSLDDGDSLHDLFLVD 232
IK F T T R+ P A ++ ++N + T+ + L G++L+ LFL+
Sbjct: 40 IKSSVSFSRKTLTPIRYSSSPADHSPATAVEA--ITNRSKTSLKSRLRGGETLYGLFLLS 97
Query: 231 F*TGTVRFSNHVGHTGLITD 172
F + H G+ ++ D
Sbjct: 98 FSPTLAEIAAHAGYDYVVVD 117
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 788,204,816
Number of Sequences: 1657284
Number of extensions: 15968354
Number of successful extensions: 36118
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 34782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36094
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75423184424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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